Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0132

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0131 and Dshi_0132 are separated by 4 nucleotidesDshi_0132 and Dshi_0133 are separated by 103 nucleotides Dshi_0131: Dshi_0131 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit (RefSeq), at 129,763 to 130,725 _0131 Dshi_0132: Dshi_0132 - FolC bifunctional protein (RefSeq), at 130,730 to 131,998 _0132 Dshi_0133: Dshi_0133 - type I secretion target repeat protein (RefSeq), at 132,102 to 133,061 _0133 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 130.714 kb on + strandat 132.028 kb on + strandat 132.135 kb on + strandat 132.143 kb on - strandat 132.272 kb on + strand, within Dshi_0133at 132.323 kb on + strand, within Dshi_0133at 132.331 kb on - strand, within Dshi_0133at 132.331 kb on - strand, within Dshi_0133at 132.343 kb on + strand, within Dshi_0133at 132.345 kb on + strand, within Dshi_0133at 132.345 kb on + strand, within Dshi_0133at 132.357 kb on + strand, within Dshi_0133at 132.727 kb on + strand, within Dshi_0133at 132.782 kb on + strand, within Dshi_0133at 132.795 kb on + strand, within Dshi_0133at 132.805 kb on + strand, within Dshi_0133at 132.839 kb on - strand, within Dshi_0133

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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130,714 + -2.5
132,028 + +1.3
132,135 + +0.1
132,143 - -1.0
132,272 + Dshi_0133 0.18 +1.4
132,323 + Dshi_0133 0.23 +0.8
132,331 - Dshi_0133 0.24 +0.8
132,331 - Dshi_0133 0.24 -1.0
132,343 + Dshi_0133 0.25 -0.1
132,345 + Dshi_0133 0.25 +0.5
132,345 + Dshi_0133 0.25 -0.2
132,357 + Dshi_0133 0.27 +0.0
132,727 + Dshi_0133 0.65 +1.4
132,782 + Dshi_0133 0.71 +0.4
132,795 + Dshi_0133 0.72 +0.8
132,805 + Dshi_0133 0.73 -0.2
132,839 - Dshi_0133 0.77 +0.5

Or see this region's nucleotide sequence