Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0032 and DVUA0034 are separated by 685 nucleotides DVUA0034 and DORF1474 are separated by 286 nucleotides
DVUA0032: DVUA0032 - hypothetical protein (TIGR), at 35,708 to 36,568
DVUA0032
DVUA0034: DVUA0034 - conserved domain protein (TIGR), at 37,254 to 40,223
DVUA0034
DORF1474: DORF1474 - no description, at 40,510 to 41,073
DORF1474
Position (kb) 37
38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 36.403 kb on + strand, within DVUA0032 at 36.406 kb on - strand, within DVUA0032 at 36.411 kb on - strand, within DVUA0032 at 36.471 kb on + strand, within DVUA0032 at 36.471 kb on + strand, within DVUA0032 at 36.479 kb on - strand, within DVUA0032 at 36.486 kb on + strand at 36.492 kb on + strand at 36.524 kb on + strand at 36.796 kb on + strand at 36.804 kb on - strand at 36.804 kb on - strand at 36.828 kb on + strand at 36.836 kb on - strand at 36.836 kb on - strand at 36.867 kb on + strand at 36.877 kb on + strand at 36.880 kb on + strand at 36.880 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.033 kb on + strand at 37.041 kb on - strand at 37.041 kb on - strand at 37.041 kb on - strand at 37.043 kb on - strand at 37.046 kb on - strand at 37.061 kb on - strand at 37.088 kb on + strand at 37.106 kb on - strand at 37.106 kb on - strand at 37.135 kb on + strand at 37.145 kb on + strand at 37.153 kb on - strand at 37.179 kb on + strand at 37.197 kb on - strand at 37.199 kb on - strand at 37.207 kb on - strand at 37.360 kb on + strand at 37.407 kb on + strand at 37.420 kb on + strand at 37.420 kb on - strand at 37.466 kb on - strand at 37.467 kb on + strand at 37.497 kb on + strand at 37.497 kb on + strand at 37.505 kb on - strand at 37.505 kb on - strand at 37.548 kb on + strand at 37.618 kb on + strand, within DVUA0034 at 37.620 kb on - strand, within DVUA0034 at 37.631 kb on - strand, within DVUA0034 at 37.703 kb on + strand, within DVUA0034 at 37.711 kb on - strand, within DVUA0034 at 37.780 kb on + strand, within DVUA0034 at 37.807 kb on + strand, within DVUA0034 at 37.813 kb on + strand, within DVUA0034 at 37.907 kb on - strand, within DVUA0034 at 37.919 kb on + strand, within DVUA0034 at 37.986 kb on - strand, within DVUA0034 at 38.082 kb on - strand, within DVUA0034 at 38.120 kb on + strand, within DVUA0034 at 38.134 kb on + strand, within DVUA0034 at 38.184 kb on + strand, within DVUA0034 at 38.191 kb on + strand, within DVUA0034 at 38.208 kb on - strand, within DVUA0034 at 38.210 kb on - strand, within DVUA0034 at 38.294 kb on - strand, within DVUA0034 at 38.297 kb on - strand, within DVUA0034 at 38.297 kb on - strand, within DVUA0034 at 38.302 kb on - strand, within DVUA0034 at 38.332 kb on - strand, within DVUA0034 at 38.373 kb on + strand, within DVUA0034 at 38.381 kb on - strand, within DVUA0034 at 38.405 kb on + strand, within DVUA0034 at 38.425 kb on + strand, within DVUA0034 at 38.455 kb on + strand, within DVUA0034 at 38.505 kb on + strand, within DVUA0034 at 38.505 kb on + strand, within DVUA0034 at 38.508 kb on - strand, within DVUA0034 at 38.569 kb on - strand, within DVUA0034 at 38.603 kb on - strand, within DVUA0034 at 38.620 kb on - strand, within DVUA0034 at 38.674 kb on - strand, within DVUA0034 at 38.725 kb on + strand, within DVUA0034 at 38.735 kb on + strand, within DVUA0034 at 38.752 kb on + strand, within DVUA0034 at 38.807 kb on - strand, within DVUA0034 at 38.834 kb on - strand, within DVUA0034 at 38.834 kb on - strand, within DVUA0034 at 38.903 kb on - strand, within DVUA0034 at 38.903 kb on - strand, within DVUA0034 at 38.979 kb on + strand, within DVUA0034 at 39.142 kb on + strand, within DVUA0034 at 39.201 kb on + strand, within DVUA0034 at 39.240 kb on + strand, within DVUA0034 at 39.305 kb on - strand, within DVUA0034 at 39.364 kb on - strand, within DVUA0034 at 39.367 kb on + strand, within DVUA0034 at 39.367 kb on + strand, within DVUA0034 at 39.384 kb on - strand, within DVUA0034 at 39.401 kb on - strand, within DVUA0034 at 39.454 kb on - strand, within DVUA0034 at 39.485 kb on - strand, within DVUA0034 at 39.654 kb on + strand, within DVUA0034 at 39.712 kb on + strand, within DVUA0034 at 39.836 kb on - strand, within DVUA0034 at 39.908 kb on + strand, within DVUA0034 at 39.932 kb on + strand at 40.097 kb on - strand at 40.151 kb on - strand at 40.248 kb on + strand at 40.299 kb on - strand at 40.305 kb on - strand at 40.414 kb on + strand at 40.422 kb on - strand at 40.422 kb on - strand at 40.422 kb on - strand at 40.731 kb on - strand, within DORF1474 at 40.840 kb on + strand, within DORF1474 at 40.980 kb on - strand, within DORF1474 at 41.022 kb on - strand at 41.035 kb on + strand at 41.035 kb on + strand at 41.043 kb on - strand at 41.044 kb on - strand at 41.098 kb on + strand at 41.185 kb on + strand at 41.185 kb on + strand at 41.185 kb on + strand at 41.193 kb on - strand at 41.193 kb on - strand at 41.193 kb on - strand at 41.193 kb on - strand at 41.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 36,403 + DVUA0032 0.81 -0.9 36,406 - DVUA0032 0.81 +0.2 36,411 - DVUA0032 0.82 +0.9 36,471 + DVUA0032 0.89 -1.6 36,471 + DVUA0032 0.89 +0.1 36,479 - DVUA0032 0.90 +0.1 36,486 + +0.1 36,492 + -0.5 36,524 + -0.7 36,796 + +0.3 36,804 - -0.5 36,804 - +0.4 36,828 + -0.9 36,836 - -0.3 36,836 - -1.7 36,867 + -1.1 36,877 + +0.1 36,880 + -1.7 36,880 + -0.6 37,033 + -1.5 37,033 + -1.0 37,033 + -0.1 37,033 + -0.3 37,033 + -0.6 37,033 + +0.5 37,033 + +0.6 37,041 - -1.3 37,041 - -0.2 37,041 - -1.8 37,043 - +0.0 37,046 - +0.1 37,061 - +0.1 37,088 + -1.2 37,106 - -0.8 37,106 - -0.5 37,135 + -0.3 37,145 + -0.4 37,153 - -0.2 37,179 + -0.2 37,197 - +0.2 37,199 - +0.0 37,207 - +0.0 37,360 + -0.1 37,407 + +0.0 37,420 + +0.2 37,420 - +0.5 37,466 - -0.1 37,467 + -1.4 37,497 + +0.1 37,497 + -0.8 37,505 - -0.9 37,505 - -1.2 37,548 + +0.0 37,618 + DVUA0034 0.12 +0.2 37,620 - DVUA0034 0.12 +0.2 37,631 - DVUA0034 0.13 +0.0 37,703 + DVUA0034 0.15 +0.3 37,711 - DVUA0034 0.15 +1.5 37,780 + DVUA0034 0.18 -1.8 37,807 + DVUA0034 0.19 -0.1 37,813 + DVUA0034 0.19 -0.6 37,907 - DVUA0034 0.22 +0.3 37,919 + DVUA0034 0.22 -0.5 37,986 - DVUA0034 0.25 +0.2 38,082 - DVUA0034 0.28 +0.1 38,120 + DVUA0034 0.29 -0.5 38,134 + DVUA0034 0.30 -1.6 38,184 + DVUA0034 0.31 +0.2 38,191 + DVUA0034 0.32 -1.4 38,208 - DVUA0034 0.32 -0.5 38,210 - DVUA0034 0.32 +0.3 38,294 - DVUA0034 0.35 -0.3 38,297 - DVUA0034 0.35 +0.1 38,297 - DVUA0034 0.35 +0.3 38,302 - DVUA0034 0.35 -0.0 38,332 - DVUA0034 0.36 -0.1 38,373 + DVUA0034 0.38 +0.4 38,381 - DVUA0034 0.38 -0.2 38,405 + DVUA0034 0.39 +0.0 38,425 + DVUA0034 0.39 -1.0 38,455 + DVUA0034 0.40 -0.6 38,505 + DVUA0034 0.42 -0.7 38,505 + DVUA0034 0.42 -0.7 38,508 - DVUA0034 0.42 -0.8 38,569 - DVUA0034 0.44 +0.7 38,603 - DVUA0034 0.45 +0.4 38,620 - DVUA0034 0.46 +0.1 38,674 - DVUA0034 0.48 -3.0 38,725 + DVUA0034 0.50 +0.3 38,735 + DVUA0034 0.50 +0.4 38,752 + DVUA0034 0.50 -0.2 38,807 - DVUA0034 0.52 +0.2 38,834 - DVUA0034 0.53 +0.3 38,834 - DVUA0034 0.53 -0.3 38,903 - DVUA0034 0.56 +0.4 38,903 - DVUA0034 0.56 +0.3 38,979 + DVUA0034 0.58 +0.1 39,142 + DVUA0034 0.64 +0.6 39,201 + DVUA0034 0.66 +0.1 39,240 + DVUA0034 0.67 +0.2 39,305 - DVUA0034 0.69 +0.0 39,364 - DVUA0034 0.71 +0.4 39,367 + DVUA0034 0.71 +0.1 39,367 + DVUA0034 0.71 +0.0 39,384 - DVUA0034 0.72 +0.4 39,401 - DVUA0034 0.72 -0.7 39,454 - DVUA0034 0.74 +0.1 39,485 - DVUA0034 0.75 +0.1 39,654 + DVUA0034 0.81 -1.6 39,712 + DVUA0034 0.83 +0.2 39,836 - DVUA0034 0.87 -0.3 39,908 + DVUA0034 0.89 -0.1 39,932 + -0.3 40,097 - +0.1 40,151 - +0.7 40,248 + -2.4 40,299 - -1.0 40,305 - +0.1 40,414 + +0.2 40,422 - -0.3 40,422 - -1.3 40,422 - +0.2 40,731 - DORF1474 0.39 -0.4 40,840 + DORF1474 0.59 -1.9 40,980 - DORF1474 0.83 +1.0 41,022 - -0.4 41,035 + -1.0 41,035 + -0.1 41,043 - -0.7 41,044 - -1.2 41,098 + +0.0 41,185 + -1.8 41,185 + -0.2 41,185 + -0.3 41,193 - +0.2 41,193 - +0.4 41,193 - +0.3 41,193 - -1.2 41,211 - -0.6
Or see this region's nucleotide sequence