Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0821

Experiment: nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0820 and Ga0059261_0821 are separated by 214 nucleotidesGa0059261_0821 and Ga0059261_0822 are separated by 2 nucleotidesGa0059261_0822 and Ga0059261_0823 are separated by 4 nucleotides Ga0059261_0820: Ga0059261_0820 - Holliday junction DNA helicase subunit RuvA, at 862,620 to 863,219 _0820 Ga0059261_0821: Ga0059261_0821 - hypothetical protein, at 863,434 to 863,886 _0821 Ga0059261_0822: Ga0059261_0822 - Holliday junction endonuclease RuvC (EC 3.1.22.4), at 863,889 to 864,374 _0822 Ga0059261_0823: Ga0059261_0823 - hypothetical protein, at 864,379 to 864,885 _0823 Position (kb) 863 864Strain fitness (log2 ratio) -1 0 1 2at 862.440 kb on + strandat 862.448 kb on + strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.449 kb on - strandat 862.483 kb on - strandat 862.483 kb on - strandat 862.498 kb on - strandat 862.498 kb on - strandat 862.498 kb on - strandat 862.926 kb on + strand, within Ga0059261_0820at 863.249 kb on - strandat 863.333 kb on - strandat 863.355 kb on + strandat 863.356 kb on - strandat 863.356 kb on - strandat 863.356 kb on - strandat 863.356 kb on - strandat 863.419 kb on - strandat 863.428 kb on + strandat 863.428 kb on + strandat 863.429 kb on - strandat 863.471 kb on + strandat 863.471 kb on + strandat 863.471 kb on + strandat 863.472 kb on - strandat 863.553 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.648 kb on + strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.649 kb on - strand, within Ga0059261_0821at 863.650 kb on + strand, within Ga0059261_0821at 863.650 kb on + strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.651 kb on - strand, within Ga0059261_0821at 863.809 kb on - strand, within Ga0059261_0821at 863.809 kb on - strand, within Ga0059261_0821at 863.891 kb on - strandat 864.383 kb on + strandat 864.383 kb on + strandat 864.384 kb on - strandat 864.384 kb on - strandat 864.432 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.566 kb on + strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strandat 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.567 kb on - strand, within Ga0059261_0823at 864.572 kb on + strandat 864.572 kb on + strand, within Ga0059261_0823at 864.572 kb on + strand, within Ga0059261_0823at 864.572 kb on + strand, within Ga0059261_0823at 864.573 kb on - strand, within Ga0059261_0823at 864.698 kb on + strand, within Ga0059261_0823at 864.698 kb on + strand, within Ga0059261_0823at 864.699 kb on - strand, within Ga0059261_0823at 864.699 kb on - strand, within Ga0059261_0823at 864.764 kb on + strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strandat 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823at 864.765 kb on - strand, within Ga0059261_0823

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 100 mM
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862,440 + +0.5
862,448 + -0.1
862,449 - +0.3
862,449 - +0.9
862,449 - -0.5
862,449 - +0.1
862,483 - -0.1
862,483 - +0.9
862,498 - +0.1
862,498 - +0.5
862,498 - +0.4
862,926 + Ga0059261_0820 0.51 -1.6
863,249 - -0.2
863,333 - -0.8
863,355 + +0.5
863,356 - -0.9
863,356 - +0.2
863,356 - +0.2
863,356 - -1.1
863,419 - -1.0
863,428 + +0.9
863,428 + -0.6
863,429 - -0.2
863,471 + +0.6
863,471 + +0.9
863,471 + -0.6
863,472 - -1.6
863,553 + Ga0059261_0821 0.26 +0.9
863,648 + Ga0059261_0821 0.47 -0.3
863,648 + Ga0059261_0821 0.47 -1.0
863,648 + Ga0059261_0821 0.47 -0.9
863,648 + Ga0059261_0821 0.47 -0.8
863,648 + Ga0059261_0821 0.47 +0.4
863,648 + Ga0059261_0821 0.47 +0.6
863,649 - Ga0059261_0821 0.47 -0.9
863,649 - Ga0059261_0821 0.47 -0.8
863,649 - Ga0059261_0821 0.47 +0.1
863,650 + Ga0059261_0821 0.48 +0.4
863,650 + Ga0059261_0821 0.48 -0.4
863,651 - Ga0059261_0821 0.48 +0.0
863,651 - Ga0059261_0821 0.48 -0.4
863,651 - Ga0059261_0821 0.48 -0.3
863,651 - Ga0059261_0821 0.48 +0.7
863,809 - Ga0059261_0821 0.83 -1.1
863,809 - Ga0059261_0821 0.83 -1.1
863,891 - -0.2
864,383 + -0.6
864,383 + +0.1
864,384 - -0.5
864,384 - -0.2
864,432 + Ga0059261_0823 0.10 -0.2
864,566 + Ga0059261_0823 0.37 -0.5
864,566 + Ga0059261_0823 0.37 -0.7
864,566 + Ga0059261_0823 0.37 +0.2
864,566 + Ga0059261_0823 0.37 -0.2
864,566 + Ga0059261_0823 0.37 +0.2
864,566 + Ga0059261_0823 0.37 -0.1
864,566 + Ga0059261_0823 0.37 -0.5
864,566 + Ga0059261_0823 0.37 +0.1
864,566 + Ga0059261_0823 0.37 +0.7
864,566 + Ga0059261_0823 0.37 -0.1
864,566 + Ga0059261_0823 0.37 +0.9
864,566 + Ga0059261_0823 0.37 -1.3
864,566 + Ga0059261_0823 0.37 -0.2
864,566 + Ga0059261_0823 0.37 +1.5
864,566 + Ga0059261_0823 0.37 -0.8
864,566 + Ga0059261_0823 0.37 -0.3
864,566 + Ga0059261_0823 0.37 +0.4
864,566 + Ga0059261_0823 0.37 -1.1
864,566 + Ga0059261_0823 0.37 +0.3
864,567 - Ga0059261_0823 0.37 -0.5
864,567 - Ga0059261_0823 0.37 +0.1
864,567 - Ga0059261_0823 0.37 +1.6
864,567 - Ga0059261_0823 0.37 -0.5
864,567 - Ga0059261_0823 0.37 +0.4
864,567 - Ga0059261_0823 0.37 +0.1
864,567 - +2.5
864,567 - Ga0059261_0823 0.37 -0.4
864,567 - Ga0059261_0823 0.37 -0.1
864,567 - Ga0059261_0823 0.37 -0.4
864,567 - Ga0059261_0823 0.37 -0.6
864,567 - Ga0059261_0823 0.37 +0.0
864,567 - Ga0059261_0823 0.37 +0.4
864,572 + +1.9
864,572 + Ga0059261_0823 0.38 -0.1
864,572 + Ga0059261_0823 0.38 -0.2
864,572 + Ga0059261_0823 0.38 -0.1
864,573 - Ga0059261_0823 0.38 -0.2
864,698 + Ga0059261_0823 0.63 +1.1
864,698 + Ga0059261_0823 0.63 +0.1
864,699 - Ga0059261_0823 0.63 +0.6
864,699 - Ga0059261_0823 0.63 -0.5
864,764 + Ga0059261_0823 0.76 -0.6
864,765 - Ga0059261_0823 0.76 -0.2
864,765 - Ga0059261_0823 0.76 +0.5
864,765 - +0.9
864,765 - Ga0059261_0823 0.76 +0.6
864,765 - Ga0059261_0823 0.76 +1.8
864,765 - Ga0059261_0823 0.76 -0.3

Or see this region's nucleotide sequence