Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32285

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32280 and AZOBR_RS32285 are separated by 44 nucleotidesAZOBR_RS32285 and AZOBR_RS32290 are separated by 100 nucleotides AZOBR_RS32280: AZOBR_RS32280 - branched-chain amino acid ABC transporter permease, at 609,586 to 610,557 _RS32280 AZOBR_RS32285: AZOBR_RS32285 - hypothetical protein, at 610,602 to 612,128 _RS32285 AZOBR_RS32290: AZOBR_RS32290 - salicylate 1-monooxygenase, at 612,229 to 613,440 _RS32290 Position (kb) 610 611 612 613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 609.661 kb on + strandat 609.661 kb on + strandat 609.661 kb on + strandat 609.661 kb on + strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.662 kb on - strandat 609.695 kb on - strand, within AZOBR_RS32280at 609.733 kb on + strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.734 kb on - strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.910 kb on + strand, within AZOBR_RS32280at 609.911 kb on - strand, within AZOBR_RS32280at 610.093 kb on + strand, within AZOBR_RS32280at 610.093 kb on + strand, within AZOBR_RS32280at 610.094 kb on - strand, within AZOBR_RS32280at 610.160 kb on - strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.252 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.261 kb on + strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.262 kb on - strand, within AZOBR_RS32280at 610.396 kb on + strand, within AZOBR_RS32280at 610.397 kb on - strand, within AZOBR_RS32280at 610.397 kb on - strand, within AZOBR_RS32280at 610.553 kb on + strandat 610.554 kb on - strandat 610.755 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.908 kb on + strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 610.909 kb on - strand, within AZOBR_RS32285at 611.343 kb on + strand, within AZOBR_RS32285at 611.344 kb on - strand, within AZOBR_RS32285at 611.728 kb on - strand, within AZOBR_RS32285at 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.036 kb on + strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.037 kb on - strandat 612.511 kb on + strand, within AZOBR_RS32290at 612.512 kb on - strand, within AZOBR_RS32290at 612.799 kb on + strand, within AZOBR_RS32290at 612.799 kb on + strand, within AZOBR_RS32290at 612.800 kb on - strand, within AZOBR_RS32290at 612.800 kb on - strand, within AZOBR_RS32290at 612.800 kb on - strand, within AZOBR_RS32290at 612.800 kb on - strand, within AZOBR_RS32290at 612.853 kb on + strand, within AZOBR_RS32290at 612.853 kb on + strand, within AZOBR_RS32290at 612.853 kb on + strand, within AZOBR_RS32290at 612.854 kb on - strand, within AZOBR_RS32290at 612.856 kb on + strand, within AZOBR_RS32290at 612.856 kb on + strand, within AZOBR_RS32290at 612.856 kb on + strand, within AZOBR_RS32290at 612.856 kb on + strand, within AZOBR_RS32290at 612.857 kb on - strand, within AZOBR_RS32290at 612.857 kb on - strand, within AZOBR_RS32290at 612.857 kb on - strand, within AZOBR_RS32290at 612.857 kb on - strand, within AZOBR_RS32290at 613.019 kb on - strand, within AZOBR_RS32290at 613.019 kb on - strand, within AZOBR_RS32290at 613.019 kb on - strand, within AZOBR_RS32290at 613.074 kb on + strand, within AZOBR_RS32290at 613.074 kb on + strand, within AZOBR_RS32290at 613.075 kb on - strand, within AZOBR_RS32290at 613.075 kb on - strand, within AZOBR_RS32290

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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609,661 + -0.2
609,661 + -3.3
609,661 + -2.7
609,661 + +1.0
609,662 - +0.4
609,662 - +1.6
609,662 - -0.0
609,662 - -0.7
609,662 - +2.1
609,695 - AZOBR_RS32280 0.11 -2.1
609,733 + AZOBR_RS32280 0.15 +0.1
609,734 - AZOBR_RS32280 0.15 +0.1
609,734 - AZOBR_RS32280 0.15 -2.1
609,734 - AZOBR_RS32280 0.15 +0.0
609,734 - AZOBR_RS32280 0.15 +0.9
609,910 + AZOBR_RS32280 0.33 -1.5
609,910 + AZOBR_RS32280 0.33 +0.9
609,910 + AZOBR_RS32280 0.33 -3.1
609,911 - AZOBR_RS32280 0.33 +0.1
610,093 + AZOBR_RS32280 0.52 +0.8
610,093 + AZOBR_RS32280 0.52 -0.3
610,094 - AZOBR_RS32280 0.52 +0.9
610,160 - AZOBR_RS32280 0.59 -0.1
610,252 + AZOBR_RS32280 0.69 -0.7
610,252 + AZOBR_RS32280 0.69 +0.3
610,252 + AZOBR_RS32280 0.69 -1.8
610,261 + AZOBR_RS32280 0.69 +0.5
610,261 + AZOBR_RS32280 0.69 -1.6
610,261 + AZOBR_RS32280 0.69 -0.4
610,261 + AZOBR_RS32280 0.69 -3.6
610,261 + AZOBR_RS32280 0.69 +0.1
610,261 + AZOBR_RS32280 0.69 -0.2
610,261 + AZOBR_RS32280 0.69 -3.1
610,262 - AZOBR_RS32280 0.70 -1.3
610,262 - AZOBR_RS32280 0.70 +1.4
610,262 - AZOBR_RS32280 0.70 +1.2
610,262 - AZOBR_RS32280 0.70 -3.8
610,262 - AZOBR_RS32280 0.70 +1.7
610,262 - AZOBR_RS32280 0.70 +0.6
610,262 - AZOBR_RS32280 0.70 -1.8
610,262 - AZOBR_RS32280 0.70 +0.5
610,396 + AZOBR_RS32280 0.83 +1.2
610,397 - AZOBR_RS32280 0.83 +0.6
610,397 - AZOBR_RS32280 0.83 -0.4
610,553 + +0.6
610,554 - -3.4
610,755 + AZOBR_RS32285 0.10 -0.4
610,908 + AZOBR_RS32285 0.20 -0.3
610,908 + AZOBR_RS32285 0.20 +0.2
610,908 + AZOBR_RS32285 0.20 -3.0
610,908 + AZOBR_RS32285 0.20 +0.9
610,908 + AZOBR_RS32285 0.20 -0.5
610,908 + AZOBR_RS32285 0.20 +2.6
610,908 + AZOBR_RS32285 0.20 +0.2
610,909 - AZOBR_RS32285 0.20 +1.4
610,909 - AZOBR_RS32285 0.20 -3.3
610,909 - AZOBR_RS32285 0.20 -0.0
610,909 - AZOBR_RS32285 0.20 -0.1
610,909 - AZOBR_RS32285 0.20 -0.3
610,909 - AZOBR_RS32285 0.20 +0.0
610,909 - AZOBR_RS32285 0.20 +0.3
611,343 + AZOBR_RS32285 0.49 -3.1
611,344 - AZOBR_RS32285 0.49 +1.2
611,728 - AZOBR_RS32285 0.74 -0.9
612,036 + -1.7
612,036 + -1.2
612,036 + +0.8
612,036 + -2.3
612,036 + -0.8
612,036 + +0.3
612,036 + -1.9
612,036 + +0.5
612,036 + +0.4
612,036 + +0.1
612,037 - -1.6
612,037 - +1.3
612,037 - +0.3
612,037 - +1.0
612,037 - +0.2
612,037 - -1.3
612,037 - +1.6
612,037 - -0.4
612,037 - -2.0
612,511 + AZOBR_RS32290 0.23 -1.9
612,512 - AZOBR_RS32290 0.23 -4.1
612,799 + AZOBR_RS32290 0.47 +1.0
612,799 + AZOBR_RS32290 0.47 +0.7
612,800 - AZOBR_RS32290 0.47 -3.3
612,800 - AZOBR_RS32290 0.47 -3.1
612,800 - AZOBR_RS32290 0.47 -4.1
612,800 - AZOBR_RS32290 0.47 +2.6
612,853 + AZOBR_RS32290 0.51 +0.4
612,853 + AZOBR_RS32290 0.51 +0.2
612,853 + AZOBR_RS32290 0.51 -0.6
612,854 - AZOBR_RS32290 0.52 +2.0
612,856 + AZOBR_RS32290 0.52 -1.7
612,856 + AZOBR_RS32290 0.52 +1.1
612,856 + AZOBR_RS32290 0.52 +0.7
612,856 + AZOBR_RS32290 0.52 -1.4
612,857 - AZOBR_RS32290 0.52 -2.9
612,857 - AZOBR_RS32290 0.52 -0.8
612,857 - AZOBR_RS32290 0.52 -0.3
612,857 - AZOBR_RS32290 0.52 -3.4
613,019 - AZOBR_RS32290 0.65 +0.2
613,019 - AZOBR_RS32290 0.65 -0.3
613,019 - AZOBR_RS32290 0.65 -1.6
613,074 + AZOBR_RS32290 0.70 +0.2
613,074 + AZOBR_RS32290 0.70 -0.4
613,075 - AZOBR_RS32290 0.70 -0.2
613,075 - AZOBR_RS32290 0.70 +0.2

Or see this region's nucleotide sequence