Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32260 and AZOBR_RS32265 are separated by 93 nucleotides AZOBR_RS32265 and AZOBR_RS32270 are separated by 265 nucleotides AZOBR_RS32270 and AZOBR_RS32275 are separated by 98 nucleotides AZOBR_RS32275 and AZOBR_RS32280 are separated by 1 nucleotides
AZOBR_RS32260: AZOBR_RS32260 - hypothetical protein, at 606,450 to 606,728
_RS32260
AZOBR_RS32265: AZOBR_RS32265 - hypothetical protein, at 606,822 to 607,211
_RS32265
AZOBR_RS32270: AZOBR_RS32270 - branched-chain amino acid ABC transporter substrate-binding protein, at 607,477 to 608,613
_RS32270
AZOBR_RS32275: AZOBR_RS32275 - branched-chain amino acid ABC transporter permease, at 608,712 to 609,584
_RS32275
AZOBR_RS32280: AZOBR_RS32280 - branched-chain amino acid ABC transporter permease, at 609,586 to 610,557
_RS32280
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.787 kb on - strand at 606.802 kb on - strand at 607.304 kb on + strand at 607.491 kb on - strand at 607.594 kb on + strand, within AZOBR_RS32270 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.822 kb on + strand, within AZOBR_RS32270 at 607.823 kb on - strand, within AZOBR_RS32270 at 607.975 kb on + strand, within AZOBR_RS32270 at 607.976 kb on - strand, within AZOBR_RS32270 at 607.976 kb on - strand, within AZOBR_RS32270 at 608.345 kb on - strand, within AZOBR_RS32270 at 608.356 kb on + strand, within AZOBR_RS32270 at 608.357 kb on - strand, within AZOBR_RS32270 at 608.392 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.482 kb on + strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.483 kb on - strand, within AZOBR_RS32270 at 608.504 kb on - strand at 608.764 kb on - strand at 608.764 kb on - strand at 608.839 kb on - strand, within AZOBR_RS32275 at 608.877 kb on + strand, within AZOBR_RS32275 at 608.877 kb on + strand, within AZOBR_RS32275 at 608.878 kb on - strand, within AZOBR_RS32275 at 608.878 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.343 kb on - strand, within AZOBR_RS32275 at 609.480 kb on + strand, within AZOBR_RS32275
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 606,787 - -1.4 606,802 - +0.5 607,304 + -0.4 607,491 - +0.7 607,594 + AZOBR_RS32270 0.10 +1.3 607,822 + AZOBR_RS32270 0.30 +0.8 607,822 + AZOBR_RS32270 0.30 +1.1 607,822 + AZOBR_RS32270 0.30 -2.2 607,823 - AZOBR_RS32270 0.30 +0.6 607,975 + AZOBR_RS32270 0.44 +0.1 607,976 - AZOBR_RS32270 0.44 -0.3 607,976 - AZOBR_RS32270 0.44 +0.4 608,345 - AZOBR_RS32270 0.76 +0.8 608,356 + AZOBR_RS32270 0.77 -0.7 608,357 - AZOBR_RS32270 0.77 -0.9 608,392 + AZOBR_RS32270 0.80 +0.8 608,482 + AZOBR_RS32270 0.88 -2.5 608,482 + AZOBR_RS32270 0.88 +0.1 608,482 + AZOBR_RS32270 0.88 +0.6 608,483 - AZOBR_RS32270 0.88 +1.3 608,483 - AZOBR_RS32270 0.88 -1.6 608,483 - AZOBR_RS32270 0.88 +0.1 608,483 - AZOBR_RS32270 0.88 -2.5 608,504 - +0.8 608,764 - -0.7 608,764 - +0.5 608,839 - AZOBR_RS32275 0.15 +2.1 608,877 + AZOBR_RS32275 0.19 +0.9 608,877 + AZOBR_RS32275 0.19 +0.1 608,878 - AZOBR_RS32275 0.19 +0.5 608,878 - AZOBR_RS32275 0.19 +1.4 609,343 - AZOBR_RS32275 0.72 -0.4 609,343 - AZOBR_RS32275 0.72 +1.1 609,343 - AZOBR_RS32275 0.72 +0.5 609,480 + AZOBR_RS32275 0.88 -0.2
Or see this region's nucleotide sequence