Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32090 and AZOBR_RS32095 overlap by 4 nucleotides AZOBR_RS32095 and AZOBR_RS32100 are separated by 506 nucleotides
AZOBR_RS32090: AZOBR_RS32090 - putative Poly(beta-D-mannuronate) C5 epimerase 3, at 566,616 to 571,850
_RS32090
AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386
_RS32095
AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513
_RS32100
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.069 kb on + strand, within AZOBR_RS32090 at 571.096 kb on - strand, within AZOBR_RS32090 at 571.243 kb on + strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.314 kb on - strand, within AZOBR_RS32090 at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.555 kb on + strand at 571.556 kb on - strand at 571.748 kb on - strand at 572.043 kb on + strand, within AZOBR_RS32095 at 572.043 kb on + strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.530 kb on - strand at 572.586 kb on - strand at 572.656 kb on - strand at 572.661 kb on + strand at 572.662 kb on - strand at 572.820 kb on + strand at 572.820 kb on + strand at 572.820 kb on + strand at 573.005 kb on + strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.317 kb on + strand, within AZOBR_RS32100
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 571,069 + AZOBR_RS32090 0.85 +0.2 571,096 - AZOBR_RS32090 0.86 +1.1 571,243 + AZOBR_RS32090 0.88 +0.1 571,244 - AZOBR_RS32090 0.88 +1.5 571,244 - AZOBR_RS32090 0.88 +0.3 571,250 - AZOBR_RS32090 0.89 -0.2 571,250 - AZOBR_RS32090 0.89 -0.0 571,250 - AZOBR_RS32090 0.89 -1.3 571,314 - AZOBR_RS32090 0.90 +1.2 571,546 + +1.1 571,546 + +0.8 571,546 + -0.8 571,546 + -1.2 571,547 - -1.2 571,547 - +2.2 571,547 - +0.1 571,555 + +0.6 571,556 - +0.8 571,748 - +2.7 572,043 + AZOBR_RS32095 0.36 -0.0 572,043 + AZOBR_RS32095 0.36 +1.3 572,044 - AZOBR_RS32095 0.36 +0.8 572,044 - AZOBR_RS32095 0.36 +1.0 572,044 - AZOBR_RS32095 0.36 +0.2 572,272 + AZOBR_RS32095 0.79 -1.5 572,272 + AZOBR_RS32095 0.79 +0.3 572,272 + AZOBR_RS32095 0.79 +0.1 572,272 + AZOBR_RS32095 0.79 -0.3 572,273 - AZOBR_RS32095 0.79 +1.2 572,273 - AZOBR_RS32095 0.79 -1.8 572,530 - -0.6 572,586 - +0.2 572,656 - +0.7 572,661 + -0.4 572,662 - +0.5 572,820 + -0.7 572,820 + -0.1 572,820 + -0.0 573,005 + AZOBR_RS32100 0.18 +2.0 573,006 - AZOBR_RS32100 0.18 -0.9 573,006 - AZOBR_RS32100 0.18 +0.8 573,006 - AZOBR_RS32100 0.18 +0.2 573,006 - AZOBR_RS32100 0.18 -0.8 573,317 + AZOBR_RS32100 0.68 +0.7
Or see this region's nucleotide sequence