Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32085 and AZOBR_RS32090 overlap by 28 nucleotides AZOBR_RS32090 and AZOBR_RS32095 overlap by 4 nucleotides
AZOBR_RS32085: AZOBR_RS32085 - hypothetical protein, at 558,568 to 566,643
_RS32085
AZOBR_RS32090: AZOBR_RS32090 - putative Poly(beta-D-mannuronate) C5 epimerase 3, at 566,616 to 571,850
_RS32090
AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386
_RS32095
Position (kb) 566
567
568
569
570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.141 kb on + strand at 566.144 kb on + strand at 566.145 kb on - strand at 566.270 kb on + strand at 566.271 kb on - strand at 566.571 kb on - strand at 566.571 kb on - strand at 566.597 kb on + strand at 566.597 kb on + strand at 566.598 kb on - strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.699 kb on - strand at 566.699 kb on - strand at 567.113 kb on + strand at 567.114 kb on - strand at 567.114 kb on - strand at 567.241 kb on + strand, within AZOBR_RS32090 at 567.241 kb on + strand, within AZOBR_RS32090 at 567.241 kb on + strand, within AZOBR_RS32090 at 567.242 kb on - strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.469 kb on - strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.692 kb on - strand, within AZOBR_RS32090 at 568.597 kb on + strand, within AZOBR_RS32090 at 568.597 kb on + strand, within AZOBR_RS32090 at 568.598 kb on - strand, within AZOBR_RS32090 at 568.598 kb on - strand, within AZOBR_RS32090 at 568.647 kb on + strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.801 kb on + strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 569.113 kb on + strand, within AZOBR_RS32090 at 569.114 kb on - strand, within AZOBR_RS32090 at 569.114 kb on - strand, within AZOBR_RS32090 at 569.594 kb on + strand, within AZOBR_RS32090 at 569.595 kb on - strand, within AZOBR_RS32090 at 569.595 kb on - strand, within AZOBR_RS32090 at 569.653 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.700 kb on - strand, within AZOBR_RS32090 at 570.136 kb on + strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.619 kb on + strand, within AZOBR_RS32090 at 570.757 kb on + strand, within AZOBR_RS32090 at 570.763 kb on + strand, within AZOBR_RS32090 at 570.764 kb on - strand, within AZOBR_RS32090 at 571.069 kb on + strand, within AZOBR_RS32090 at 571.096 kb on - strand, within AZOBR_RS32090 at 571.243 kb on + strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.314 kb on - strand, within AZOBR_RS32090 at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.555 kb on + strand at 571.556 kb on - strand at 571.748 kb on - strand at 572.043 kb on + strand, within AZOBR_RS32095 at 572.043 kb on + strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.530 kb on - strand at 572.586 kb on - strand at 572.656 kb on - strand at 572.661 kb on + strand at 572.662 kb on - strand at 572.820 kb on + strand at 572.820 kb on + strand at 572.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 566,141 + +0.7 566,144 + +0.9 566,145 - -2.6 566,270 + +0.5 566,271 - -2.1 566,571 - +1.5 566,571 - -1.3 566,597 + -1.3 566,597 + -0.2 566,598 - +0.7 566,698 + +0.9 566,698 + -2.0 566,698 + -0.1 566,699 - -0.2 566,699 - -1.1 567,113 + -1.5 567,114 - -1.0 567,114 - -0.1 567,241 + AZOBR_RS32090 0.12 -0.1 567,241 + AZOBR_RS32090 0.12 +1.1 567,241 + AZOBR_RS32090 0.12 +0.9 567,242 - AZOBR_RS32090 0.12 -0.2 567,468 + AZOBR_RS32090 0.16 -0.7 567,468 + AZOBR_RS32090 0.16 +0.0 567,468 + AZOBR_RS32090 0.16 +0.3 567,468 + AZOBR_RS32090 0.16 +0.4 567,469 - AZOBR_RS32090 0.16 -0.2 567,691 + AZOBR_RS32090 0.21 +1.3 567,691 + AZOBR_RS32090 0.21 -1.2 567,691 + AZOBR_RS32090 0.21 -1.6 567,692 - AZOBR_RS32090 0.21 +0.4 568,597 + AZOBR_RS32090 0.38 +1.0 568,597 + AZOBR_RS32090 0.38 -0.5 568,598 - AZOBR_RS32090 0.38 +0.8 568,598 - AZOBR_RS32090 0.38 -0.4 568,647 + AZOBR_RS32090 0.39 -2.1 568,648 - AZOBR_RS32090 0.39 +0.5 568,648 - AZOBR_RS32090 0.39 +0.3 568,648 - AZOBR_RS32090 0.39 -0.3 568,648 - AZOBR_RS32090 0.39 -1.2 568,648 - AZOBR_RS32090 0.39 -2.7 568,648 - AZOBR_RS32090 0.39 -3.5 568,648 - AZOBR_RS32090 0.39 +0.0 568,648 - AZOBR_RS32090 0.39 +1.2 568,723 + AZOBR_RS32090 0.40 +0.3 568,723 + AZOBR_RS32090 0.40 +0.5 568,723 + AZOBR_RS32090 0.40 -1.2 568,723 + AZOBR_RS32090 0.40 -0.0 568,723 + AZOBR_RS32090 0.40 -0.1 568,723 + AZOBR_RS32090 0.40 +0.2 568,723 + AZOBR_RS32090 0.40 +2.7 568,724 - AZOBR_RS32090 0.40 -1.4 568,724 - AZOBR_RS32090 0.40 +1.8 568,724 - AZOBR_RS32090 0.40 -1.2 568,724 - AZOBR_RS32090 0.40 -0.8 568,801 + AZOBR_RS32090 0.42 -0.7 568,802 - AZOBR_RS32090 0.42 -1.9 568,802 - AZOBR_RS32090 0.42 +0.4 568,802 - AZOBR_RS32090 0.42 +1.6 569,113 + AZOBR_RS32090 0.48 -1.4 569,114 - AZOBR_RS32090 0.48 -0.3 569,114 - AZOBR_RS32090 0.48 +0.1 569,594 + AZOBR_RS32090 0.57 -1.1 569,595 - AZOBR_RS32090 0.57 -0.2 569,595 - AZOBR_RS32090 0.57 -3.1 569,653 + AZOBR_RS32090 0.58 -3.1 569,689 + AZOBR_RS32090 0.59 +0.2 569,689 + AZOBR_RS32090 0.59 +0.7 569,689 + AZOBR_RS32090 0.59 -0.1 569,689 + AZOBR_RS32090 0.59 +0.5 569,690 - AZOBR_RS32090 0.59 -2.8 569,690 - AZOBR_RS32090 0.59 +0.3 569,690 - AZOBR_RS32090 0.59 -0.2 569,690 - AZOBR_RS32090 0.59 +0.7 569,690 - AZOBR_RS32090 0.59 -2.3 569,690 - AZOBR_RS32090 0.59 -0.3 569,700 - AZOBR_RS32090 0.59 +0.1 570,136 + AZOBR_RS32090 0.67 -1.9 570,137 - AZOBR_RS32090 0.67 -0.9 570,137 - AZOBR_RS32090 0.67 +0.3 570,137 - AZOBR_RS32090 0.67 -1.2 570,619 + AZOBR_RS32090 0.76 +0.8 570,757 + AZOBR_RS32090 0.79 -0.0 570,763 + AZOBR_RS32090 0.79 +0.7 570,764 - AZOBR_RS32090 0.79 -0.2 571,069 + AZOBR_RS32090 0.85 +0.2 571,096 - AZOBR_RS32090 0.86 +1.1 571,243 + AZOBR_RS32090 0.88 +0.1 571,244 - AZOBR_RS32090 0.88 +1.5 571,244 - AZOBR_RS32090 0.88 +0.3 571,250 - AZOBR_RS32090 0.89 -0.2 571,250 - AZOBR_RS32090 0.89 -0.0 571,250 - AZOBR_RS32090 0.89 -1.3 571,314 - AZOBR_RS32090 0.90 +1.2 571,546 + +1.1 571,546 + +0.8 571,546 + -0.8 571,546 + -1.2 571,547 - -1.2 571,547 - +2.2 571,547 - +0.1 571,555 + +0.6 571,556 - +0.8 571,748 - +2.7 572,043 + AZOBR_RS32095 0.36 -0.0 572,043 + AZOBR_RS32095 0.36 +1.3 572,044 - AZOBR_RS32095 0.36 +0.8 572,044 - AZOBR_RS32095 0.36 +1.0 572,044 - AZOBR_RS32095 0.36 +0.2 572,272 + AZOBR_RS32095 0.79 -1.5 572,272 + AZOBR_RS32095 0.79 +0.3 572,272 + AZOBR_RS32095 0.79 +0.1 572,272 + AZOBR_RS32095 0.79 -0.3 572,273 - AZOBR_RS32095 0.79 +1.2 572,273 - AZOBR_RS32095 0.79 -1.8 572,530 - -0.6 572,586 - +0.2 572,656 - +0.7 572,661 + -0.4 572,662 - +0.5 572,820 + -0.7 572,820 + -0.1 572,820 + -0.0
Or see this region's nucleotide sequence