Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31405 and AZOBR_RS31410 are separated by 401 nucleotides AZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides
AZOBR_RS31405: AZOBR_RS31405 - C4-dicarboxylate ABC transporter permease, at 413,555 to 414,043
_RS31405
AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506
_RS31410
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
Position (kb) 414
415
416 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 413.867 kb on + strand, within AZOBR_RS31405 at 413.867 kb on + strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 414.308 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.345 kb on - strand at 414.345 kb on - strand at 414.803 kb on + strand, within AZOBR_RS31410 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.914 kb on + strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 415.010 kb on + strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.094 kb on + strand, within AZOBR_RS31410 at 415.109 kb on + strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.202 kb on + strand, within AZOBR_RS31410 at 415.203 kb on - strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.457 kb on + strand at 415.494 kb on - strand at 415.557 kb on - strand at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 416.178 kb on + strand, within AZOBR_RS31415 at 416.179 kb on - strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 413,867 + AZOBR_RS31405 0.64 -1.6 413,867 + AZOBR_RS31405 0.64 -1.4 413,904 - AZOBR_RS31405 0.71 +0.4 413,904 - AZOBR_RS31405 0.71 -0.4 413,904 - AZOBR_RS31405 0.71 +1.0 413,904 - AZOBR_RS31405 0.71 +1.9 413,904 - AZOBR_RS31405 0.71 +0.3 413,907 - AZOBR_RS31405 0.72 -3.2 413,907 - AZOBR_RS31405 0.72 -0.4 413,907 - AZOBR_RS31405 0.72 -1.2 413,907 - AZOBR_RS31405 0.72 -0.3 413,907 - AZOBR_RS31405 0.72 +0.8 413,907 - AZOBR_RS31405 0.72 +2.5 413,907 - AZOBR_RS31405 0.72 +0.1 413,907 - AZOBR_RS31405 0.72 +0.8 414,308 + -0.6 414,344 + +0.2 414,344 + +1.6 414,344 + +0.2 414,344 + -1.6 414,344 + +0.3 414,344 + +0.1 414,345 - -0.1 414,345 - +0.9 414,803 + AZOBR_RS31410 0.34 -2.2 414,803 + AZOBR_RS31410 0.34 +0.7 414,804 - AZOBR_RS31410 0.34 +0.6 414,804 - AZOBR_RS31410 0.34 -3.9 414,804 - AZOBR_RS31410 0.34 -1.1 414,914 + AZOBR_RS31410 0.44 +1.0 414,993 - AZOBR_RS31410 0.52 -2.4 414,993 - AZOBR_RS31410 0.52 +1.0 415,010 + AZOBR_RS31410 0.53 -1.9 415,011 - AZOBR_RS31410 0.53 +1.2 415,011 - AZOBR_RS31410 0.53 +0.5 415,011 - AZOBR_RS31410 0.53 +1.3 415,011 - AZOBR_RS31410 0.53 +1.0 415,094 + AZOBR_RS31410 0.61 +0.1 415,109 + AZOBR_RS31410 0.63 +0.5 415,110 - AZOBR_RS31410 0.63 +1.1 415,110 - AZOBR_RS31410 0.63 -1.3 415,157 + AZOBR_RS31410 0.67 +0.9 415,157 + AZOBR_RS31410 0.67 -3.6 415,157 + AZOBR_RS31410 0.67 +0.8 415,157 + AZOBR_RS31410 0.67 -1.4 415,158 - AZOBR_RS31410 0.67 +1.0 415,158 - AZOBR_RS31410 0.67 +0.8 415,158 - AZOBR_RS31410 0.67 +0.8 415,158 - AZOBR_RS31410 0.67 +0.8 415,182 - AZOBR_RS31410 0.69 +0.8 415,182 - AZOBR_RS31410 0.69 -0.3 415,202 + AZOBR_RS31410 0.71 -1.6 415,203 - AZOBR_RS31410 0.71 -0.1 415,304 + AZOBR_RS31410 0.81 -0.3 415,304 + AZOBR_RS31410 0.81 +1.2 415,305 - AZOBR_RS31410 0.81 +1.3 415,305 - AZOBR_RS31410 0.81 -1.4 415,305 - AZOBR_RS31410 0.81 +0.3 415,305 - AZOBR_RS31410 0.81 +1.6 415,305 - AZOBR_RS31410 0.81 +0.3 415,457 + -2.2 415,494 - -1.2 415,557 - +0.6 415,687 - AZOBR_RS31415 0.11 +0.1 415,687 - AZOBR_RS31415 0.11 -0.7 415,687 - AZOBR_RS31415 0.11 -2.2 415,687 - AZOBR_RS31415 0.11 -2.9 416,178 + AZOBR_RS31415 0.74 -2.0 416,179 - AZOBR_RS31415 0.74 -0.6 416,259 + AZOBR_RS31415 0.84 -1.3 416,259 + AZOBR_RS31415 0.84 -1.4
Or see this region's nucleotide sequence