Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31240 and AZOBR_RS31245 are separated by 255 nucleotides AZOBR_RS31245 and AZOBR_RS31250 overlap by 4 nucleotides
AZOBR_RS31240: AZOBR_RS31240 - sugar ABC transporter substrate-binding protein, at 373,056 to 374,132
_RS31240
AZOBR_RS31245: AZOBR_RS31245 - ABC transporter ATP-binding protein, at 374,388 to 375,944
_RS31245
AZOBR_RS31250: AZOBR_RS31250 - ABC transporter permease, at 375,941 to 377,152
_RS31250
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 373.443 kb on + strand, within AZOBR_RS31240 at 373.443 kb on + strand, within AZOBR_RS31240 at 373.443 kb on + strand, within AZOBR_RS31240 at 373.443 kb on + strand, within AZOBR_RS31240 at 373.446 kb on + strand, within AZOBR_RS31240 at 373.446 kb on + strand, within AZOBR_RS31240 at 373.491 kb on + strand, within AZOBR_RS31240 at 373.491 kb on + strand, within AZOBR_RS31240 at 373.491 kb on + strand, within AZOBR_RS31240 at 373.491 kb on + strand, within AZOBR_RS31240 at 373.492 kb on - strand, within AZOBR_RS31240 at 373.492 kb on - strand, within AZOBR_RS31240 at 373.578 kb on + strand, within AZOBR_RS31240 at 373.579 kb on - strand, within AZOBR_RS31240 at 373.587 kb on + strand, within AZOBR_RS31240 at 373.588 kb on - strand, within AZOBR_RS31240 at 373.737 kb on + strand, within AZOBR_RS31240 at 374.043 kb on + strand at 374.106 kb on + strand at 374.107 kb on - strand at 374.109 kb on + strand at 374.109 kb on + strand at 374.109 kb on + strand at 374.109 kb on + strand at 374.109 kb on + strand at 374.110 kb on - strand at 374.110 kb on - strand at 374.168 kb on - strand at 374.168 kb on - strand at 374.262 kb on + strand at 374.405 kb on - strand at 374.550 kb on + strand, within AZOBR_RS31245 at 375.720 kb on + strand, within AZOBR_RS31245 at 375.720 kb on + strand, within AZOBR_RS31245 at 375.721 kb on - strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.729 kb on + strand, within AZOBR_RS31245 at 375.730 kb on - strand, within AZOBR_RS31245 at 375.730 kb on - strand, within AZOBR_RS31245 at 375.822 kb on + strand at 375.823 kb on - strand at 375.823 kb on - strand at 375.823 kb on - strand at 376.065 kb on - strand, within AZOBR_RS31250 at 376.065 kb on - strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.127 kb on + strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.128 kb on - strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.658 kb on + strand, within AZOBR_RS31250 at 376.659 kb on - strand at 376.659 kb on - strand, within AZOBR_RS31250 at 376.659 kb on - strand, within AZOBR_RS31250 at 376.733 kb on + strand, within AZOBR_RS31250 at 376.734 kb on - strand, within AZOBR_RS31250 at 376.734 kb on - strand, within AZOBR_RS31250 at 376.841 kb on + strand, within AZOBR_RS31250
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 373,443 + AZOBR_RS31240 0.36 -0.0 373,443 + AZOBR_RS31240 0.36 +0.9 373,443 + AZOBR_RS31240 0.36 +1.2 373,443 + AZOBR_RS31240 0.36 +0.3 373,446 + AZOBR_RS31240 0.36 +1.2 373,446 + AZOBR_RS31240 0.36 -0.4 373,491 + AZOBR_RS31240 0.40 +1.6 373,491 + AZOBR_RS31240 0.40 +0.6 373,491 + AZOBR_RS31240 0.40 +0.9 373,491 + AZOBR_RS31240 0.40 -2.8 373,492 - AZOBR_RS31240 0.40 -0.1 373,492 - AZOBR_RS31240 0.40 -0.5 373,578 + AZOBR_RS31240 0.48 +0.8 373,579 - AZOBR_RS31240 0.49 -1.6 373,587 + AZOBR_RS31240 0.49 -1.4 373,588 - AZOBR_RS31240 0.49 +0.1 373,737 + AZOBR_RS31240 0.63 -3.2 374,043 + -1.8 374,106 + +3.0 374,107 - +0.2 374,109 + +0.6 374,109 + +0.2 374,109 + +0.2 374,109 + -2.1 374,109 + -0.4 374,110 - +1.3 374,110 - -3.2 374,168 - +0.8 374,168 - +0.5 374,262 + +0.3 374,405 - +0.8 374,550 + AZOBR_RS31245 0.10 +0.7 375,720 + AZOBR_RS31245 0.86 -0.3 375,720 + AZOBR_RS31245 0.86 -0.2 375,721 - AZOBR_RS31245 0.86 -0.6 375,729 + AZOBR_RS31245 0.86 +2.9 375,729 + AZOBR_RS31245 0.86 +0.2 375,729 + AZOBR_RS31245 0.86 +0.6 375,730 - AZOBR_RS31245 0.86 +1.6 375,730 - AZOBR_RS31245 0.86 +1.2 375,822 + -2.2 375,823 - +1.0 375,823 - +0.6 375,823 - -0.1 376,065 - AZOBR_RS31250 0.10 +0.4 376,065 - AZOBR_RS31250 0.10 -0.8 376,127 + AZOBR_RS31250 0.15 -0.9 376,127 + AZOBR_RS31250 0.15 +0.8 376,127 + AZOBR_RS31250 0.15 -0.9 376,128 - AZOBR_RS31250 0.15 +0.1 376,128 - AZOBR_RS31250 0.15 -1.4 376,128 - AZOBR_RS31250 0.15 -3.1 376,128 - AZOBR_RS31250 0.15 -2.6 376,128 - AZOBR_RS31250 0.15 +1.0 376,128 - AZOBR_RS31250 0.15 +0.8 376,658 + AZOBR_RS31250 0.59 -1.9 376,658 + AZOBR_RS31250 0.59 +0.6 376,658 + AZOBR_RS31250 0.59 +0.6 376,658 + AZOBR_RS31250 0.59 +2.6 376,658 + AZOBR_RS31250 0.59 +2.9 376,659 - +2.2 376,659 - AZOBR_RS31250 0.59 +0.9 376,659 - AZOBR_RS31250 0.59 -0.5 376,733 + AZOBR_RS31250 0.65 -0.1 376,734 - AZOBR_RS31250 0.65 +0.4 376,734 - AZOBR_RS31250 0.65 +0.6 376,841 + AZOBR_RS31250 0.74 +1.2
Or see this region's nucleotide sequence