Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29880 and AZOBR_RS29885 are separated by 111 nucleotides AZOBR_RS29885 and AZOBR_RS29890 overlap by 11 nucleotides AZOBR_RS29890 and AZOBR_RS29895 are separated by 4 nucleotides AZOBR_RS29895 and AZOBR_RS29900 overlap by 4 nucleotides
AZOBR_RS29880: AZOBR_RS29880 - flagellin, at 49,689 to 50,933
_RS29880
AZOBR_RS29885: AZOBR_RS29885 - flagellar basal body protein FliL, at 51,045 to 51,437
_RS29885
AZOBR_RS29890: AZOBR_RS29890 - flagellar protein, at 51,427 to 51,864
_RS29890
AZOBR_RS29895: AZOBR_RS29895 - hypothetical protein, at 51,869 to 52,246
_RS29895
AZOBR_RS29900: AZOBR_RS29900 - flagellar basal body rod protein FlgG, at 52,243 to 53,037
_RS29900
Position (kb) 51
52 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 50.100 kb on + strand, within AZOBR_RS29880 at 50.100 kb on + strand, within AZOBR_RS29880 at 50.184 kb on + strand, within AZOBR_RS29880 at 50.184 kb on + strand, within AZOBR_RS29880 at 50.185 kb on - strand, within AZOBR_RS29880 at 50.419 kb on - strand, within AZOBR_RS29880 at 50.986 kb on - strand at 51.033 kb on + strand at 51.033 kb on + strand at 51.034 kb on - strand at 51.034 kb on - strand at 51.034 kb on - strand at 51.105 kb on + strand, within AZOBR_RS29885 at 51.105 kb on + strand, within AZOBR_RS29885 at 51.426 kb on + strand at 51.426 kb on + strand at 51.427 kb on - strand at 51.427 kb on - strand at 51.427 kb on - strand at 51.506 kb on - strand, within AZOBR_RS29890 at 51.643 kb on + strand, within AZOBR_RS29890 at 51.644 kb on - strand, within AZOBR_RS29890 at 51.679 kb on + strand, within AZOBR_RS29890 at 51.679 kb on + strand, within AZOBR_RS29890 at 51.679 kb on + strand, within AZOBR_RS29890 at 51.680 kb on - strand, within AZOBR_RS29890 at 51.680 kb on - strand, within AZOBR_RS29890 at 51.752 kb on - strand, within AZOBR_RS29890 at 51.752 kb on - strand, within AZOBR_RS29890 at 51.754 kb on + strand, within AZOBR_RS29890 at 51.754 kb on + strand, within AZOBR_RS29890 at 51.754 kb on + strand, within AZOBR_RS29890 at 51.754 kb on + strand, within AZOBR_RS29890 at 51.755 kb on - strand, within AZOBR_RS29890 at 51.755 kb on - strand, within AZOBR_RS29890 at 51.755 kb on - strand, within AZOBR_RS29890 at 51.755 kb on - strand, within AZOBR_RS29890 at 51.755 kb on - strand, within AZOBR_RS29890 at 52.178 kb on + strand, within AZOBR_RS29895 at 52.178 kb on + strand, within AZOBR_RS29895 at 52.261 kb on + strand at 52.262 kb on - strand at 52.292 kb on - strand at 52.339 kb on + strand, within AZOBR_RS29900 at 52.339 kb on + strand, within AZOBR_RS29900 at 52.340 kb on - strand, within AZOBR_RS29900 at 52.402 kb on + strand, within AZOBR_RS29900
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 50,100 + AZOBR_RS29880 0.33 -1.6 50,100 + AZOBR_RS29880 0.33 -0.3 50,184 + AZOBR_RS29880 0.40 +1.4 50,184 + AZOBR_RS29880 0.40 -0.8 50,185 - AZOBR_RS29880 0.40 -2.6 50,419 - AZOBR_RS29880 0.59 -0.1 50,986 - +0.3 51,033 + -0.4 51,033 + -0.4 51,034 - +0.4 51,034 - +1.4 51,034 - -0.5 51,105 + AZOBR_RS29885 0.15 -0.0 51,105 + AZOBR_RS29885 0.15 -1.1 51,426 + -2.0 51,426 + -2.8 51,427 - -0.2 51,427 - -4.2 51,427 - +0.7 51,506 - AZOBR_RS29890 0.18 -2.3 51,643 + AZOBR_RS29890 0.49 +0.0 51,644 - AZOBR_RS29890 0.50 -0.5 51,679 + AZOBR_RS29890 0.58 +0.4 51,679 + AZOBR_RS29890 0.58 +1.6 51,679 + AZOBR_RS29890 0.58 -0.9 51,680 - AZOBR_RS29890 0.58 -0.0 51,680 - AZOBR_RS29890 0.58 +1.5 51,752 - AZOBR_RS29890 0.74 -0.6 51,752 - AZOBR_RS29890 0.74 -2.8 51,754 + AZOBR_RS29890 0.75 +0.2 51,754 + AZOBR_RS29890 0.75 -3.2 51,754 + AZOBR_RS29890 0.75 +1.4 51,754 + AZOBR_RS29890 0.75 +0.7 51,755 - AZOBR_RS29890 0.75 -0.3 51,755 - AZOBR_RS29890 0.75 -0.3 51,755 - AZOBR_RS29890 0.75 -2.2 51,755 - AZOBR_RS29890 0.75 +0.3 51,755 - AZOBR_RS29890 0.75 -1.2 52,178 + AZOBR_RS29895 0.82 +1.5 52,178 + AZOBR_RS29895 0.82 +0.3 52,261 + +0.4 52,262 - -1.6 52,292 - -0.2 52,339 + AZOBR_RS29900 0.12 +0.5 52,339 + AZOBR_RS29900 0.12 -0.9 52,340 - AZOBR_RS29900 0.12 +0.9 52,402 + AZOBR_RS29900 0.20 -0.7
Or see this region's nucleotide sequence