Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29545 and AZOBR_RS29550 are separated by 234 nucleotides AZOBR_RS29550 and AZOBR_RS29555 overlap by 4 nucleotides
AZOBR_RS29545: AZOBR_RS29545 - acriflavin resistance protein, at 750,548 to 753,712
_RS29545
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
AZOBR_RS29555: AZOBR_RS29555 - enterobactin synthase subunit E, at 755,149 to 756,780
_RS29555
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.177 kb on - strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.558 kb on - strand at 753.558 kb on - strand at 753.609 kb on + strand at 753.711 kb on - strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.957 kb on + strand at 754.043 kb on + strand at 754.044 kb on - strand at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550 at 754.911 kb on - strand, within AZOBR_RS29550 at 755.007 kb on - strand, within AZOBR_RS29550 at 755.325 kb on - strand, within AZOBR_RS29555 at 755.779 kb on + strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 753,176 + AZOBR_RS29545 0.83 +3.3 753,176 + AZOBR_RS29545 0.83 -0.8 753,176 + AZOBR_RS29545 0.83 -2.7 753,177 - AZOBR_RS29545 0.83 -0.6 753,278 + AZOBR_RS29545 0.86 +0.1 753,278 + AZOBR_RS29545 0.86 +0.3 753,278 + AZOBR_RS29545 0.86 -2.1 753,279 - AZOBR_RS29545 0.86 +0.4 753,279 - AZOBR_RS29545 0.86 +0.6 753,558 - -1.9 753,558 - -2.4 753,609 + +0.5 753,711 - +0.8 753,810 + -1.6 753,810 + +0.2 753,810 + -0.0 753,810 + +0.1 753,957 + -1.1 754,043 + +0.4 754,044 - +0.3 754,233 - AZOBR_RS29550 0.24 +1.1 754,374 + AZOBR_RS29550 0.35 -0.1 754,374 + AZOBR_RS29550 0.35 -0.4 754,375 - AZOBR_RS29550 0.35 -0.9 754,463 + AZOBR_RS29550 0.43 -2.3 754,463 + AZOBR_RS29550 0.43 -2.1 754,463 + AZOBR_RS29550 0.43 +0.7 754,464 - AZOBR_RS29550 0.43 +0.3 754,464 - AZOBR_RS29550 0.43 +1.1 754,487 + AZOBR_RS29550 0.45 -3.5 754,658 + AZOBR_RS29550 0.59 -3.3 754,911 - AZOBR_RS29550 0.80 +0.3 755,007 - AZOBR_RS29550 0.88 -0.2 755,325 - AZOBR_RS29555 0.11 +1.4 755,779 + AZOBR_RS29555 0.39 +1.6 755,780 - AZOBR_RS29555 0.39 -0.9 755,780 - AZOBR_RS29555 0.39 -0.3 755,780 - AZOBR_RS29555 0.39 +0.7 755,780 - AZOBR_RS29555 0.39 +0.7
Or see this region's nucleotide sequence