Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29400 and AZOBR_RS29405 are separated by 17 nucleotides AZOBR_RS29405 and AZOBR_RS29410 overlap by 19 nucleotides AZOBR_RS29410 and AZOBR_RS29415 are separated by 71 nucleotides AZOBR_RS29415 and AZOBR_RS29420 overlap by 4 nucleotides
AZOBR_RS29400: AZOBR_RS29400 - taurine ABC transporter permease, at 717,597 to 718,436
_RS29400
AZOBR_RS29405: AZOBR_RS29405 - ATP-binding protein, at 718,454 to 719,296
_RS29405
AZOBR_RS29410: AZOBR_RS29410 - sulfonate ABC transporter substrate-binding protein, at 719,278 to 720,351
_RS29410
AZOBR_RS29415: AZOBR_RS29415 - hypothetical protein, at 720,423 to 721,124
_RS29415
AZOBR_RS29420: AZOBR_RS29420 - nitrilase, at 721,121 to 722,050
_RS29420
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 718.778 kb on + strand, within AZOBR_RS29405 at 718.778 kb on + strand, within AZOBR_RS29405 at 718.779 kb on - strand, within AZOBR_RS29405 at 718.779 kb on - strand, within AZOBR_RS29405 at 718.916 kb on + strand, within AZOBR_RS29405 at 719.719 kb on + strand, within AZOBR_RS29410 at 719.719 kb on + strand, within AZOBR_RS29410 at 719.872 kb on + strand, within AZOBR_RS29410 at 719.872 kb on + strand, within AZOBR_RS29410 at 719.873 kb on - strand, within AZOBR_RS29410 at 719.873 kb on - strand, within AZOBR_RS29410 at 720.029 kb on - strand, within AZOBR_RS29410 at 720.029 kb on - strand, within AZOBR_RS29410 at 720.128 kb on - strand, within AZOBR_RS29410 at 720.430 kb on + strand at 720.431 kb on - strand at 720.431 kb on - strand at 720.588 kb on + strand, within AZOBR_RS29415 at 720.588 kb on + strand, within AZOBR_RS29415 at 721.341 kb on - strand, within AZOBR_RS29420
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 718,778 + AZOBR_RS29405 0.38 +0.1 718,778 + AZOBR_RS29405 0.38 -3.0 718,779 - AZOBR_RS29405 0.39 +0.4 718,779 - AZOBR_RS29405 0.39 +0.4 718,916 + AZOBR_RS29405 0.55 +0.8 719,719 + AZOBR_RS29410 0.41 -0.9 719,719 + AZOBR_RS29410 0.41 +0.4 719,872 + AZOBR_RS29410 0.55 +0.5 719,872 + AZOBR_RS29410 0.55 -1.8 719,873 - AZOBR_RS29410 0.55 -0.8 719,873 - AZOBR_RS29410 0.55 -2.4 720,029 - AZOBR_RS29410 0.70 -0.2 720,029 - AZOBR_RS29410 0.70 -0.8 720,128 - AZOBR_RS29410 0.79 -1.2 720,430 + +0.8 720,431 - -2.6 720,431 - -0.6 720,588 + AZOBR_RS29415 0.24 -0.6 720,588 + AZOBR_RS29415 0.24 +0.1 721,341 - AZOBR_RS29420 0.24 -0.3
Or see this region's nucleotide sequence