Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28100

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28095 and AZOBR_RS28100 are separated by 298 nucleotidesAZOBR_RS28100 and AZOBR_RS28105 are separated by 146 nucleotides AZOBR_RS28095: AZOBR_RS28095 - transporter, at 474,576 to 475,436 _RS28095 AZOBR_RS28100: AZOBR_RS28100 - LysR family transcriptional regulator, at 475,735 to 476,625 _RS28100 AZOBR_RS28105: AZOBR_RS28105 - hypothetical protein, at 476,772 to 477,896 _RS28105 Position (kb) 475 476 477Strain fitness (log2 ratio) -2 -1 0 1at 474.791 kb on - strand, within AZOBR_RS28095at 474.791 kb on - strand, within AZOBR_RS28095at 474.947 kb on - strand, within AZOBR_RS28095at 475.517 kb on + strandat 475.518 kb on - strandat 475.535 kb on + strandat 475.536 kb on - strandat 475.536 kb on - strandat 475.541 kb on + strandat 475.542 kb on - strandat 475.642 kb on + strandat 475.965 kb on - strand, within AZOBR_RS28100at 476.309 kb on + strand, within AZOBR_RS28100at 476.310 kb on - strand, within AZOBR_RS28100at 476.310 kb on - strand, within AZOBR_RS28100at 477.015 kb on + strand, within AZOBR_RS28105at 477.015 kb on + strand, within AZOBR_RS28105at 477.015 kb on + strand, within AZOBR_RS28105at 477.015 kb on + strand, within AZOBR_RS28105at 477.220 kb on - strand, within AZOBR_RS28105at 477.459 kb on + strand, within AZOBR_RS28105

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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474,791 - AZOBR_RS28095 0.25 -0.2
474,791 - AZOBR_RS28095 0.25 -0.6
474,947 - AZOBR_RS28095 0.43 -1.2
475,517 + +0.4
475,518 - +0.2
475,535 + -0.4
475,536 - +0.7
475,536 - -1.8
475,541 + +0.5
475,542 - -1.3
475,642 + -0.5
475,965 - AZOBR_RS28100 0.26 -1.1
476,309 + AZOBR_RS28100 0.64 -0.1
476,310 - AZOBR_RS28100 0.65 -0.6
476,310 - AZOBR_RS28100 0.65 +0.0
477,015 + AZOBR_RS28105 0.22 +0.9
477,015 + AZOBR_RS28105 0.22 +1.1
477,015 + AZOBR_RS28105 0.22 -0.0
477,015 + AZOBR_RS28105 0.22 +0.7
477,220 - AZOBR_RS28105 0.40 -0.2
477,459 + AZOBR_RS28105 0.61 -2.0

Or see this region's nucleotide sequence