Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28080

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28075 and AZOBR_RS28080 are separated by 121 nucleotides AZOBR_RS28075: AZOBR_RS28075 - membrane protein, at 465,298 to 466,434 _RS28075 AZOBR_RS28080: AZOBR_RS28080 - GntR family transcriptional regulator, at 466,556 to 467,281 _RS28080 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1at 465.569 kb on + strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.623 kb on + strand, within AZOBR_RS28075at 465.624 kb on - strand, within AZOBR_RS28075at 465.624 kb on - strand, within AZOBR_RS28075at 465.648 kb on - strand, within AZOBR_RS28075at 465.806 kb on + strand, within AZOBR_RS28075at 465.806 kb on + strand, within AZOBR_RS28075at 465.807 kb on - strand, within AZOBR_RS28075at 465.807 kb on - strand, within AZOBR_RS28075at 465.932 kb on + strand, within AZOBR_RS28075at 465.933 kb on - strand, within AZOBR_RS28075at 465.933 kb on - strand, within AZOBR_RS28075at 465.956 kb on + strand, within AZOBR_RS28075at 465.957 kb on - strand, within AZOBR_RS28075at 466.016 kb on + strand, within AZOBR_RS28075at 466.017 kb on - strand, within AZOBR_RS28075at 466.788 kb on + strand, within AZOBR_RS28080at 467.440 kb on + strandat 467.441 kb on - strandat 467.444 kb on - strandat 467.627 kb on + strandat 467.688 kb on - strandat 467.688 kb on - strandat 467.688 kb on - strandat 467.840 kb on + strandat 467.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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465,569 + AZOBR_RS28075 0.24 +0.2
465,570 - AZOBR_RS28075 0.24 -2.5
465,570 - AZOBR_RS28075 0.24 -0.2
465,570 - AZOBR_RS28075 0.24 +0.4
465,570 - AZOBR_RS28075 0.24 -1.2
465,570 - AZOBR_RS28075 0.24 +1.0
465,570 - AZOBR_RS28075 0.24 -0.2
465,623 + AZOBR_RS28075 0.29 -0.1
465,624 - AZOBR_RS28075 0.29 +0.0
465,624 - AZOBR_RS28075 0.29 +0.1
465,648 - AZOBR_RS28075 0.31 +1.0
465,806 + AZOBR_RS28075 0.45 -1.4
465,806 + AZOBR_RS28075 0.45 +0.1
465,807 - AZOBR_RS28075 0.45 -0.1
465,807 - AZOBR_RS28075 0.45 -0.5
465,932 + AZOBR_RS28075 0.56 -0.3
465,933 - AZOBR_RS28075 0.56 -1.2
465,933 - AZOBR_RS28075 0.56 +0.3
465,956 + AZOBR_RS28075 0.58 +0.4
465,957 - AZOBR_RS28075 0.58 -0.6
466,016 + AZOBR_RS28075 0.63 -0.0
466,017 - AZOBR_RS28075 0.63 +0.6
466,788 + AZOBR_RS28080 0.32 -2.2
467,440 + -0.0
467,441 - -1.3
467,444 - -0.2
467,627 + +0.0
467,688 - +1.0
467,688 - +1.0
467,688 - -0.3
467,840 + -0.6
467,877 + -0.7

Or see this region's nucleotide sequence