Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27960 and AZOBR_RS27965 are separated by 3 nucleotides AZOBR_RS27965 and AZOBR_RS27970 are separated by 93 nucleotides AZOBR_RS27970 and AZOBR_RS27975 are separated by 86 nucleotides AZOBR_RS27975 and AZOBR_RS27980 are separated by 31 nucleotides
AZOBR_RS27960: AZOBR_RS27960 - multidrug ABC transporter ATP-binding protein, at 443,310 to 446,057
_RS27960
AZOBR_RS27965: AZOBR_RS27965 - membrane protein, at 446,061 to 447,182
_RS27965
AZOBR_RS27970: AZOBR_RS27970 - transposase (fragment), at 447,276 to 447,698
_RS27970
AZOBR_RS27975: AZOBR_RS27975 - transposase, at 447,785 to 447,949
_RS27975
AZOBR_RS27980: AZOBR_RS27980 - sugar ABC transporter ATP-binding protein, at 447,981 to 449,063
_RS27980
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 445.440 kb on + strand, within AZOBR_RS27960 at 445.572 kb on + strand, within AZOBR_RS27960 at 445.573 kb on - strand, within AZOBR_RS27960 at 445.623 kb on + strand, within AZOBR_RS27960 at 445.624 kb on - strand, within AZOBR_RS27960 at 445.734 kb on + strand, within AZOBR_RS27960 at 445.734 kb on + strand, within AZOBR_RS27960 at 445.735 kb on - strand, within AZOBR_RS27960 at 445.735 kb on - strand, within AZOBR_RS27960 at 446.146 kb on - strand at 446.167 kb on - strand at 446.460 kb on + strand, within AZOBR_RS27965 at 446.460 kb on + strand, within AZOBR_RS27965 at 446.461 kb on - strand, within AZOBR_RS27965 at 447.430 kb on + strand, within AZOBR_RS27970 at 447.442 kb on + strand, within AZOBR_RS27970 at 447.443 kb on - strand, within AZOBR_RS27970 at 447.712 kb on + strand at 447.713 kb on - strand at 447.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 445,440 + AZOBR_RS27960 0.78 +0.8 445,572 + AZOBR_RS27960 0.82 -0.5 445,573 - AZOBR_RS27960 0.82 -1.1 445,623 + AZOBR_RS27960 0.84 -0.4 445,624 - AZOBR_RS27960 0.84 -2.1 445,734 + AZOBR_RS27960 0.88 +1.6 445,734 + AZOBR_RS27960 0.88 -0.1 445,735 - AZOBR_RS27960 0.88 +0.3 445,735 - AZOBR_RS27960 0.88 -0.9 446,146 - +0.7 446,167 - -0.4 446,460 + AZOBR_RS27965 0.36 -0.8 446,460 + AZOBR_RS27965 0.36 -0.5 446,461 - AZOBR_RS27965 0.36 -0.3 447,430 + AZOBR_RS27970 0.36 +0.8 447,442 + AZOBR_RS27970 0.39 -1.6 447,443 - AZOBR_RS27970 0.39 -0.2 447,712 + +0.1 447,713 - -0.4 447,713 - -0.3
Or see this region's nucleotide sequence