Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27765 and AZOBR_RS27770 overlap by 4 nucleotides AZOBR_RS27770 and AZOBR_RS27775 are separated by 487 nucleotides
AZOBR_RS27765: AZOBR_RS27765 - hypothetical protein, at 395,544 to 396,509
_RS27765
AZOBR_RS27770: AZOBR_RS27770 - hypothetical protein, at 396,506 to 398,569
_RS27770
AZOBR_RS27775: AZOBR_RS27775 - sensor protein (fragment), at 399,057 to 400,811
_RS27775
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 395.773 kb on + strand, within AZOBR_RS27765 at 395.774 kb on - strand, within AZOBR_RS27765 at 395.774 kb on - strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.493 kb on + strand at 396.493 kb on + strand at 396.660 kb on + strand at 396.798 kb on + strand, within AZOBR_RS27770 at 396.799 kb on - strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.871 kb on - strand, within AZOBR_RS27770 at 396.871 kb on - strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 397.480 kb on - strand, within AZOBR_RS27770 at 397.617 kb on + strand, within AZOBR_RS27770 at 397.617 kb on + strand, within AZOBR_RS27770 at 397.618 kb on - strand, within AZOBR_RS27770 at 397.744 kb on - strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.759 kb on - strand, within AZOBR_RS27770 at 397.759 kb on - strand, within AZOBR_RS27770 at 397.776 kb on + strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 398.442 kb on + strand at 398.442 kb on + strand at 398.442 kb on + strand at 398.443 kb on - strand at 398.586 kb on + strand at 398.587 kb on - strand at 398.587 kb on - strand at 398.684 kb on - strand at 398.684 kb on - strand at 398.872 kb on + strand at 398.872 kb on + strand at 398.873 kb on - strand at 398.878 kb on - strand at 398.878 kb on - strand at 398.901 kb on + strand at 398.902 kb on - strand at 398.923 kb on + strand at 398.931 kb on + strand at 398.932 kb on - strand at 399.016 kb on - strand at 399.016 kb on - strand at 399.042 kb on + strand at 399.042 kb on + strand at 399.042 kb on + strand at 399.043 kb on - strand at 399.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 395,773 + AZOBR_RS27765 0.24 -0.8 395,774 - AZOBR_RS27765 0.24 +0.4 395,774 - AZOBR_RS27765 0.24 -2.3 396,172 + AZOBR_RS27765 0.65 -0.2 396,172 + AZOBR_RS27765 0.65 +1.2 396,172 + AZOBR_RS27765 0.65 +0.5 396,173 - AZOBR_RS27765 0.65 +0.7 396,173 - AZOBR_RS27765 0.65 +1.5 396,173 - AZOBR_RS27765 0.65 +0.5 396,173 - AZOBR_RS27765 0.65 +0.7 396,493 + +0.6 396,493 + -0.0 396,660 + +0.4 396,798 + AZOBR_RS27770 0.14 -0.6 396,799 - AZOBR_RS27770 0.14 +0.3 396,870 + AZOBR_RS27770 0.18 -0.2 396,870 + AZOBR_RS27770 0.18 -2.2 396,870 + AZOBR_RS27770 0.18 -1.8 396,871 - AZOBR_RS27770 0.18 -0.8 396,871 - AZOBR_RS27770 0.18 -2.9 396,984 + AZOBR_RS27770 0.23 +0.5 396,984 + AZOBR_RS27770 0.23 +0.2 396,984 + AZOBR_RS27770 0.23 +0.7 396,984 + AZOBR_RS27770 0.23 -0.1 396,985 - AZOBR_RS27770 0.23 -0.5 396,985 - AZOBR_RS27770 0.23 -0.4 396,985 - AZOBR_RS27770 0.23 -0.1 396,985 - AZOBR_RS27770 0.23 -0.9 396,985 - AZOBR_RS27770 0.23 +0.1 396,985 - AZOBR_RS27770 0.23 -1.2 396,985 - AZOBR_RS27770 0.23 +0.3 396,985 - AZOBR_RS27770 0.23 +0.8 397,480 - AZOBR_RS27770 0.47 -3.0 397,617 + AZOBR_RS27770 0.54 +0.0 397,617 + AZOBR_RS27770 0.54 -0.9 397,618 - AZOBR_RS27770 0.54 -0.1 397,744 - AZOBR_RS27770 0.60 -1.0 397,758 + AZOBR_RS27770 0.61 +2.4 397,758 + AZOBR_RS27770 0.61 +0.2 397,758 + AZOBR_RS27770 0.61 -0.0 397,758 + AZOBR_RS27770 0.61 -0.2 397,759 - AZOBR_RS27770 0.61 +0.6 397,759 - AZOBR_RS27770 0.61 +0.1 397,776 + AZOBR_RS27770 0.62 -1.1 397,777 - AZOBR_RS27770 0.62 +0.7 397,777 - AZOBR_RS27770 0.62 -3.3 397,777 - AZOBR_RS27770 0.62 -0.4 397,777 - AZOBR_RS27770 0.62 -1.1 397,777 - AZOBR_RS27770 0.62 -0.8 398,442 + -0.1 398,442 + +0.2 398,442 + -0.1 398,443 - -0.3 398,586 + +0.3 398,587 - +0.1 398,587 - -1.2 398,684 - -1.4 398,684 - -2.9 398,872 + -2.3 398,872 + -0.5 398,873 - +0.4 398,878 - -0.7 398,878 - +1.8 398,901 + +0.2 398,902 - +0.9 398,923 + +2.1 398,931 + +0.3 398,932 - +0.3 399,016 - +1.0 399,016 - +0.6 399,042 + +0.7 399,042 + -0.0 399,042 + -1.5 399,043 - +1.1 399,043 - +0.9
Or see this region's nucleotide sequence