Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27620

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27615 and AZOBR_RS27620 are separated by 103 nucleotidesAZOBR_RS27620 and AZOBR_RS27625 are separated by 779 nucleotides AZOBR_RS27615: AZOBR_RS27615 - GntR family transcriptional regulator, at 357,947 to 358,729 _RS27615 AZOBR_RS27620: AZOBR_RS27620 - transcriptional regulator, at 358,833 to 359,735 _RS27620 AZOBR_RS27625: AZOBR_RS27625 - hypothetical protein, at 360,515 to 361,201 _RS27625 Position (kb) 358 359 360Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 358.493 kb on + strand, within AZOBR_RS27615at 358.496 kb on + strand, within AZOBR_RS27615at 358.496 kb on + strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 358.497 kb on - strand, within AZOBR_RS27615at 359.041 kb on - strand, within AZOBR_RS27620at 359.052 kb on - strand, within AZOBR_RS27620at 359.058 kb on + strand, within AZOBR_RS27620at 359.059 kb on - strand, within AZOBR_RS27620at 359.127 kb on + strand, within AZOBR_RS27620at 359.127 kb on + strand, within AZOBR_RS27620at 359.128 kb on - strand, within AZOBR_RS27620at 359.250 kb on + strand, within AZOBR_RS27620at 359.277 kb on - strand, within AZOBR_RS27620at 359.777 kb on + strandat 360.398 kb on + strandat 360.399 kb on - strandat 360.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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358,493 + AZOBR_RS27615 0.70 -0.1
358,496 + AZOBR_RS27615 0.70 -4.5
358,496 + AZOBR_RS27615 0.70 -3.3
358,497 - AZOBR_RS27615 0.70 -2.2
358,497 - AZOBR_RS27615 0.70 -1.0
358,497 - AZOBR_RS27615 0.70 -2.8
359,041 - AZOBR_RS27620 0.23 +0.3
359,052 - AZOBR_RS27620 0.24 +0.3
359,058 + AZOBR_RS27620 0.25 +1.1
359,059 - AZOBR_RS27620 0.25 -1.6
359,127 + AZOBR_RS27620 0.33 +1.6
359,127 + AZOBR_RS27620 0.33 +0.2
359,128 - AZOBR_RS27620 0.33 +0.6
359,250 + AZOBR_RS27620 0.46 +2.6
359,277 - AZOBR_RS27620 0.49 -1.5
359,777 + -0.3
360,398 + +0.4
360,399 - +0.5
360,515 - -2.3

Or see this region's nucleotide sequence