Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26370

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26365 and AZOBR_RS26370 are separated by 185 nucleotidesAZOBR_RS26370 and AZOBR_RS26375 are separated by 42 nucleotides AZOBR_RS26365: AZOBR_RS26365 - cytosine deaminase, at 61,807 to 63,078 _RS26365 AZOBR_RS26370: AZOBR_RS26370 - alpha/beta hydrolase, at 63,264 to 64,028 _RS26370 AZOBR_RS26375: AZOBR_RS26375 - hypothetical protein, at 64,071 to 64,952 _RS26375 Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 62.330 kb on + strand, within AZOBR_RS26365at 62.538 kb on - strand, within AZOBR_RS26365at 63.508 kb on + strand, within AZOBR_RS26370at 63.626 kb on + strand, within AZOBR_RS26370at 63.627 kb on - strand, within AZOBR_RS26370at 63.627 kb on - strand, within AZOBR_RS26370at 63.783 kb on + strand, within AZOBR_RS26370at 63.783 kb on + strand, within AZOBR_RS26370at 63.783 kb on + strand, within AZOBR_RS26370at 63.783 kb on + strand, within AZOBR_RS26370at 63.784 kb on - strand, within AZOBR_RS26370at 63.784 kb on - strand, within AZOBR_RS26370at 63.784 kb on - strand, within AZOBR_RS26370at 64.028 kb on + strandat 64.029 kb on - strandat 64.311 kb on + strand, within AZOBR_RS26375at 64.407 kb on - strand, within AZOBR_RS26375at 64.454 kb on - strand, within AZOBR_RS26375at 64.454 kb on - strand, within AZOBR_RS26375at 64.471 kb on + strand, within AZOBR_RS26375at 64.702 kb on + strand, within AZOBR_RS26375at 64.702 kb on + strand, within AZOBR_RS26375at 64.819 kb on + strand, within AZOBR_RS26375

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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62,330 + AZOBR_RS26365 0.41 +0.9
62,538 - AZOBR_RS26365 0.57 +2.1
63,508 + AZOBR_RS26370 0.32 -0.0
63,626 + AZOBR_RS26370 0.47 +0.5
63,627 - AZOBR_RS26370 0.47 -1.5
63,627 - AZOBR_RS26370 0.47 -1.2
63,783 + AZOBR_RS26370 0.68 +0.7
63,783 + AZOBR_RS26370 0.68 -3.0
63,783 + AZOBR_RS26370 0.68 -1.5
63,783 + AZOBR_RS26370 0.68 -1.8
63,784 - AZOBR_RS26370 0.68 +1.1
63,784 - AZOBR_RS26370 0.68 -0.7
63,784 - AZOBR_RS26370 0.68 -0.5
64,028 + -2.8
64,029 - +0.3
64,311 + AZOBR_RS26375 0.27 -2.7
64,407 - AZOBR_RS26375 0.38 +1.1
64,454 - AZOBR_RS26375 0.43 -0.5
64,454 - AZOBR_RS26375 0.43 +0.8
64,471 + AZOBR_RS26375 0.45 +0.3
64,702 + AZOBR_RS26375 0.72 -2.9
64,702 + AZOBR_RS26375 0.72 -2.3
64,819 + AZOBR_RS26375 0.85 -1.1

Or see this region's nucleotide sequence