Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26175 and AZOBR_RS26180 are separated by 276 nucleotides AZOBR_RS26180 and AZOBR_RS26185 are separated by 107 nucleotides
AZOBR_RS26175: AZOBR_RS26175 - hypothetical protein, at 18,238 to 19,353
_RS26175
AZOBR_RS26180: AZOBR_RS26180 - glycosyl transferase, at 19,630 to 20,220
_RS26180
AZOBR_RS26185: AZOBR_RS26185 - hypothetical protein, at 20,328 to 21,179
_RS26185
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.030 kb on + strand, within AZOBR_RS26175 at 19.150 kb on + strand, within AZOBR_RS26175 at 19.151 kb on - strand, within AZOBR_RS26175 at 19.151 kb on - strand, within AZOBR_RS26175 at 19.151 kb on - strand, within AZOBR_RS26175 at 19.151 kb on - strand, within AZOBR_RS26175 at 19.358 kb on - strand at 19.695 kb on + strand, within AZOBR_RS26180 at 19.696 kb on - strand, within AZOBR_RS26180 at 20.021 kb on - strand, within AZOBR_RS26180 at 20.021 kb on - strand, within AZOBR_RS26180 at 20.021 kb on - strand at 20.034 kb on + strand, within AZOBR_RS26180 at 20.035 kb on - strand, within AZOBR_RS26180 at 20.035 kb on - strand, within AZOBR_RS26180 at 20.134 kb on + strand, within AZOBR_RS26180 at 20.135 kb on - strand, within AZOBR_RS26180 at 20.135 kb on - strand, within AZOBR_RS26180 at 20.215 kb on + strand at 20.215 kb on + strand at 20.268 kb on + strand at 20.269 kb on - strand at 20.842 kb on + strand, within AZOBR_RS26185 at 20.842 kb on + strand, within AZOBR_RS26185 at 20.842 kb on + strand, within AZOBR_RS26185 at 20.842 kb on + strand, within AZOBR_RS26185 at 20.930 kb on + strand, within AZOBR_RS26185 at 20.930 kb on + strand, within AZOBR_RS26185 at 20.930 kb on + strand, within AZOBR_RS26185 at 20.931 kb on - strand, within AZOBR_RS26185 at 20.931 kb on - strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.051 kb on + strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.052 kb on - strand, within AZOBR_RS26185 at 21.104 kb on - strand at 21.169 kb on + strand at 21.169 kb on + strand at 21.177 kb on + strand at 21.177 kb on + strand at 21.177 kb on + strand at 21.178 kb on - strand at 21.178 kb on - strand at 21.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 19,030 + AZOBR_RS26175 0.71 +0.0 19,150 + AZOBR_RS26175 0.82 -0.8 19,151 - AZOBR_RS26175 0.82 -1.5 19,151 - AZOBR_RS26175 0.82 +2.2 19,151 - AZOBR_RS26175 0.82 -0.6 19,151 - AZOBR_RS26175 0.82 +0.6 19,358 - -0.9 19,695 + AZOBR_RS26180 0.11 -0.9 19,696 - AZOBR_RS26180 0.11 -2.8 20,021 - AZOBR_RS26180 0.66 +0.2 20,021 - AZOBR_RS26180 0.66 -2.2 20,021 - -0.2 20,034 + AZOBR_RS26180 0.68 -0.7 20,035 - AZOBR_RS26180 0.69 -2.3 20,035 - AZOBR_RS26180 0.69 -2.2 20,134 + AZOBR_RS26180 0.85 -1.1 20,135 - AZOBR_RS26180 0.85 -2.2 20,135 - AZOBR_RS26180 0.85 -1.1 20,215 + +0.7 20,215 + -0.8 20,268 + +0.4 20,269 - +0.4 20,842 + AZOBR_RS26185 0.60 +0.9 20,842 + AZOBR_RS26185 0.60 +0.5 20,842 + AZOBR_RS26185 0.60 +0.4 20,842 + AZOBR_RS26185 0.60 +0.7 20,930 + AZOBR_RS26185 0.71 -0.1 20,930 + AZOBR_RS26185 0.71 +0.8 20,930 + AZOBR_RS26185 0.71 +0.0 20,931 - AZOBR_RS26185 0.71 -1.3 20,931 - AZOBR_RS26185 0.71 +1.1 21,051 + AZOBR_RS26185 0.85 -0.0 21,051 + AZOBR_RS26185 0.85 +1.7 21,051 + AZOBR_RS26185 0.85 +1.1 21,051 + AZOBR_RS26185 0.85 -1.0 21,051 + AZOBR_RS26185 0.85 -0.5 21,051 + AZOBR_RS26185 0.85 -0.1 21,051 + AZOBR_RS26185 0.85 +1.1 21,052 - AZOBR_RS26185 0.85 -2.3 21,052 - AZOBR_RS26185 0.85 +0.4 21,052 - AZOBR_RS26185 0.85 -0.1 21,052 - AZOBR_RS26185 0.85 +0.4 21,052 - AZOBR_RS26185 0.85 -0.4 21,052 - AZOBR_RS26185 0.85 +0.6 21,052 - AZOBR_RS26185 0.85 +0.3 21,104 - -1.9 21,169 + +1.6 21,169 + -1.1 21,177 + +1.8 21,177 + +1.2 21,177 + -3.0 21,178 - +0.1 21,178 - -2.4 21,178 - +1.3
Or see this region's nucleotide sequence