Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25925 and AZOBR_RS25930 are separated by 15 nucleotides AZOBR_RS25930 and AZOBR_RS25935 are separated by 22 nucleotides AZOBR_RS25935 and AZOBR_RS25940 are separated by 163 nucleotides AZOBR_RS25940 and AZOBR_RS25945 are separated by 81 nucleotides
AZOBR_RS25925: AZOBR_RS25925 - type II citrate synthase, at 870,144 to 871,427
_RS25925
AZOBR_RS25930: AZOBR_RS25930 - aldose 1-epimerase, at 871,443 to 872,306
_RS25930
AZOBR_RS25935: AZOBR_RS25935 - antibiotic resistance protein, at 872,329 to 872,976
_RS25935
AZOBR_RS25940: AZOBR_RS25940 - regulator, at 873,140 to 873,547
_RS25940
AZOBR_RS25945: AZOBR_RS25945 - hypothetical protein, at 873,629 to 874,261
_RS25945
Position (kb) 872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 871.377 kb on + strand at 871.444 kb on + strand at 871.445 kb on - strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 872.343 kb on - strand at 872.789 kb on + strand, within AZOBR_RS25935 at 873.093 kb on - strand at 873.093 kb on - strand at 873.093 kb on - strand at 873.094 kb on + strand at 873.202 kb on - strand, within AZOBR_RS25940 at 873.205 kb on - strand, within AZOBR_RS25940
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 871,377 + +0.4 871,444 + +0.9 871,445 - -2.5 871,466 + -0.3 871,466 + -3.0 871,466 + +1.3 871,466 + +1.2 871,466 + -0.3 871,466 + -1.3 871,466 + +0.3 871,466 + -0.4 871,466 + +0.7 871,467 - -0.0 871,467 - +1.0 871,467 - -0.8 871,467 - +0.2 871,467 - -1.2 872,343 - +1.3 872,789 + AZOBR_RS25935 0.71 -1.9 873,093 - +0.4 873,093 - +1.6 873,093 - +1.2 873,094 + +1.2 873,202 - AZOBR_RS25940 0.15 +0.5 873,205 - AZOBR_RS25940 0.16 +0.0
Or see this region's nucleotide sequence