Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25635 and AZOBR_RS25645 are separated by 997 nucleotides AZOBR_RS25645 and AZOBR_RS25650 are separated by 82 nucleotides AZOBR_RS25650 and AZOBR_RS25655 are separated by 71 nucleotides
AZOBR_RS25635: AZOBR_RS25635 - high-affinity branched-chain amino acid ABC transporter (permease protein) (fragment), at 799,246 to 800,232
_RS25635
AZOBR_RS25645: AZOBR_RS25645 - amino acid ABC transporter substrate-binding protein, at 801,230 to 802,342
_RS25645
AZOBR_RS25650: AZOBR_RS25650 - hypothetical protein, at 802,425 to 802,889
_RS25650
AZOBR_RS25655: AZOBR_RS25655 - oxidoreductase, at 802,961 to 804,241
_RS25655
Position (kb) 801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 800.508 kb on + strand at 800.508 kb on + strand at 800.509 kb on - strand at 800.509 kb on - strand at 800.598 kb on + strand at 800.598 kb on + strand at 800.598 kb on + strand at 800.599 kb on - strand at 800.599 kb on - strand at 800.668 kb on + strand at 800.767 kb on + strand at 800.767 kb on + strand at 801.043 kb on + strand at 801.043 kb on + strand at 801.044 kb on - strand at 801.118 kb on + strand at 801.119 kb on - strand at 801.119 kb on - strand at 801.119 kb on - strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.160 kb on + strand at 801.161 kb on - strand at 801.161 kb on - strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.163 kb on + strand at 801.164 kb on - strand at 801.164 kb on - strand at 801.164 kb on - strand at 801.613 kb on - strand, within AZOBR_RS25645 at 801.688 kb on - strand, within AZOBR_RS25645 at 801.688 kb on - strand, within AZOBR_RS25645 at 801.688 kb on - strand, within AZOBR_RS25645 at 801.735 kb on + strand, within AZOBR_RS25645 at 801.867 kb on + strand, within AZOBR_RS25645 at 801.868 kb on - strand, within AZOBR_RS25645 at 801.868 kb on - strand, within AZOBR_RS25645 at 801.897 kb on + strand, within AZOBR_RS25645 at 801.897 kb on + strand, within AZOBR_RS25645 at 801.898 kb on - strand, within AZOBR_RS25645 at 801.898 kb on - strand, within AZOBR_RS25645 at 801.898 kb on - strand, within AZOBR_RS25645 at 801.939 kb on + strand, within AZOBR_RS25645 at 801.939 kb on + strand, within AZOBR_RS25645 at 801.940 kb on - strand, within AZOBR_RS25645 at 801.940 kb on - strand, within AZOBR_RS25645 at 801.957 kb on + strand, within AZOBR_RS25645 at 801.957 kb on + strand, within AZOBR_RS25645 at 801.958 kb on - strand, within AZOBR_RS25645 at 802.008 kb on + strand, within AZOBR_RS25645 at 802.009 kb on - strand, within AZOBR_RS25645 at 802.009 kb on - strand, within AZOBR_RS25645 at 802.009 kb on - strand, within AZOBR_RS25645 at 802.218 kb on + strand, within AZOBR_RS25645 at 802.219 kb on - strand, within AZOBR_RS25645 at 802.219 kb on - strand, within AZOBR_RS25645 at 802.252 kb on - strand at 802.400 kb on - strand at 802.414 kb on + strand at 802.415 kb on - strand at 802.415 kb on - strand at 802.415 kb on - strand at 802.415 kb on - strand at 802.855 kb on + strand at 802.855 kb on + strand at 802.877 kb on - strand at 803.100 kb on + strand, within AZOBR_RS25655 at 803.100 kb on + strand, within AZOBR_RS25655 at 803.238 kb on + strand, within AZOBR_RS25655 at 803.238 kb on + strand, within AZOBR_RS25655 at 803.239 kb on - strand, within AZOBR_RS25655
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 800,508 + -0.1 800,508 + +0.1 800,509 - +1.1 800,509 - +0.4 800,598 + -0.5 800,598 + -3.2 800,598 + -0.5 800,599 - +0.2 800,599 - -0.8 800,668 + +0.1 800,767 + -0.5 800,767 + -0.1 801,043 + -0.9 801,043 + -3.0 801,044 - -2.9 801,118 + -0.3 801,119 - -0.1 801,119 - -0.7 801,119 - -0.6 801,160 + -0.3 801,160 + -0.5 801,160 + -0.4 801,160 + -0.3 801,161 - +0.7 801,161 - -0.8 801,163 + -0.5 801,163 + +1.8 801,163 + -2.0 801,163 + -0.8 801,164 - -1.3 801,164 - -2.3 801,164 - +0.1 801,613 - AZOBR_RS25645 0.34 -0.0 801,688 - AZOBR_RS25645 0.41 +0.0 801,688 - AZOBR_RS25645 0.41 -0.3 801,688 - AZOBR_RS25645 0.41 -0.1 801,735 + AZOBR_RS25645 0.45 -1.3 801,867 + AZOBR_RS25645 0.57 +0.1 801,868 - AZOBR_RS25645 0.57 -2.2 801,868 - AZOBR_RS25645 0.57 -1.4 801,897 + AZOBR_RS25645 0.60 -0.1 801,897 + AZOBR_RS25645 0.60 -1.5 801,898 - AZOBR_RS25645 0.60 -2.1 801,898 - AZOBR_RS25645 0.60 -2.1 801,898 - AZOBR_RS25645 0.60 -1.1 801,939 + AZOBR_RS25645 0.64 -0.5 801,939 + AZOBR_RS25645 0.64 -0.0 801,940 - AZOBR_RS25645 0.64 -0.3 801,940 - AZOBR_RS25645 0.64 +0.2 801,957 + AZOBR_RS25645 0.65 +0.3 801,957 + AZOBR_RS25645 0.65 -0.5 801,958 - AZOBR_RS25645 0.65 +0.1 802,008 + AZOBR_RS25645 0.70 -0.6 802,009 - AZOBR_RS25645 0.70 +0.3 802,009 - AZOBR_RS25645 0.70 -1.8 802,009 - AZOBR_RS25645 0.70 +0.1 802,218 + AZOBR_RS25645 0.89 -0.0 802,219 - AZOBR_RS25645 0.89 +0.1 802,219 - AZOBR_RS25645 0.89 +0.7 802,252 - +0.3 802,400 - -0.1 802,414 + +0.7 802,415 - -1.6 802,415 - -0.2 802,415 - +0.5 802,415 - -1.0 802,855 + +0.2 802,855 + +0.1 802,877 - -0.4 803,100 + AZOBR_RS25655 0.11 -0.4 803,100 + AZOBR_RS25655 0.11 -0.4 803,238 + AZOBR_RS25655 0.22 -1.3 803,238 + AZOBR_RS25655 0.22 +0.2 803,239 - AZOBR_RS25655 0.22 -0.2
Or see this region's nucleotide sequence