Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24530

Experiment: Paraquat dichloride 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS24520 and AZOBR_RS24530 are separated by 495 nucleotidesAZOBR_RS24530 and AZOBR_RS24535 overlap by 7 nucleotides AZOBR_RS24520: AZOBR_RS24520 - hypothetical protein, at 560,138 to 560,740 _RS24520 AZOBR_RS24530: AZOBR_RS24530 - formylmethanofuran dehydrogenase, at 561,236 to 562,507 _RS24530 AZOBR_RS24535: AZOBR_RS24535 - formylmethanofuran dehydrogenase subunit A, at 562,501 to 564,162 _RS24535 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1at 560.777 kb on - strandat 560.779 kb on - strandat 560.779 kb on - strandat 561.187 kb on + strandat 561.188 kb on - strandat 561.196 kb on + strandat 561.197 kb on - strandat 562.532 kb on - strandat 562.532 kb on - strandat 562.837 kb on + strand, within AZOBR_RS24535at 562.838 kb on - strand, within AZOBR_RS24535at 563.006 kb on - strand, within AZOBR_RS24535at 563.006 kb on - strand, within AZOBR_RS24535at 563.084 kb on - strand, within AZOBR_RS24535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
remove
560,777 - -0.8
560,779 - -0.8
560,779 - -0.7
561,187 + +0.9
561,188 - +0.1
561,196 + +0.9
561,197 - +0.2
562,532 - +0.2
562,532 - -3.5
562,837 + AZOBR_RS24535 0.20 -0.8
562,838 - AZOBR_RS24535 0.20 -3.7
563,006 - AZOBR_RS24535 0.30 -1.4
563,006 - AZOBR_RS24535 0.30 -1.4
563,084 - AZOBR_RS24535 0.35 -1.3

Or see this region's nucleotide sequence