Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23310 and AZOBR_RS23315 are separated by 53 nucleotides AZOBR_RS23315 and AZOBR_RS23320 overlap by 7 nucleotides AZOBR_RS23320 and AZOBR_RS23325 are separated by 466 nucleotides
AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379
_RS23310
AZOBR_RS23315: AZOBR_RS23315 - conserved membrane protein of unknown function, at 256,433 to 256,918
_RS23315
AZOBR_RS23320: AZOBR_RS23320 - C4-dicarboxylate ABC transporter permease, at 256,912 to 258,414
_RS23320
AZOBR_RS23325: AZOBR_RS23325 - RNA polymerase sigma70, at 258,881 to 259,414
_RS23325
Position (kb) 256
257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.291 kb on - strand at 256.496 kb on + strand, within AZOBR_RS23315 at 256.709 kb on + strand, within AZOBR_RS23315 at 256.709 kb on + strand, within AZOBR_RS23315 at 256.710 kb on - strand, within AZOBR_RS23315 at 256.710 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.911 kb on + strand at 256.911 kb on + strand at 256.912 kb on - strand at 256.922 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.988 kb on - strand at 257.179 kb on + strand, within AZOBR_RS23320 at 257.179 kb on + strand, within AZOBR_RS23320 at 257.179 kb on + strand, within AZOBR_RS23320 at 257.743 kb on + strand, within AZOBR_RS23320 at 257.743 kb on + strand, within AZOBR_RS23320 at 257.744 kb on - strand, within AZOBR_RS23320 at 257.744 kb on - strand, within AZOBR_RS23320 at 257.744 kb on - strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.854 kb on + strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.855 kb on - strand, within AZOBR_RS23320 at 257.977 kb on + strand, within AZOBR_RS23320 at 257.978 kb on - strand, within AZOBR_RS23320 at 258.080 kb on - strand, within AZOBR_RS23320 at 258.182 kb on - strand, within AZOBR_RS23320 at 258.496 kb on + strand at 258.830 kb on - strand at 259.227 kb on + strand, within AZOBR_RS23325
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 256,252 - AZOBR_RS23310 0.87 +1.8 256,252 - AZOBR_RS23310 0.87 +3.2 256,291 - -0.7 256,496 + AZOBR_RS23315 0.13 -1.2 256,709 + AZOBR_RS23315 0.57 -0.3 256,709 + AZOBR_RS23315 0.57 -0.8 256,710 - AZOBR_RS23315 0.57 +0.3 256,710 - AZOBR_RS23315 0.57 -1.3 256,867 - AZOBR_RS23315 0.89 -0.7 256,867 - AZOBR_RS23315 0.89 +0.1 256,867 - AZOBR_RS23315 0.89 -0.2 256,911 + -1.1 256,911 + +0.2 256,912 - -1.3 256,922 + -0.6 256,987 + -0.4 256,987 + +0.4 256,987 + -0.2 256,987 + -0.5 256,987 + -1.9 256,987 + +0.7 256,987 + -0.2 256,988 - -1.6 257,179 + AZOBR_RS23320 0.18 -0.1 257,179 + AZOBR_RS23320 0.18 +0.1 257,179 + AZOBR_RS23320 0.18 -0.2 257,743 + AZOBR_RS23320 0.55 +1.5 257,743 + AZOBR_RS23320 0.55 -1.0 257,744 - AZOBR_RS23320 0.55 -2.0 257,744 - AZOBR_RS23320 0.55 +0.7 257,744 - AZOBR_RS23320 0.55 +1.0 257,854 + AZOBR_RS23320 0.63 -2.3 257,854 + AZOBR_RS23320 0.63 +0.1 257,854 + AZOBR_RS23320 0.63 +1.2 257,854 + AZOBR_RS23320 0.63 +1.4 257,854 + AZOBR_RS23320 0.63 -0.5 257,854 + AZOBR_RS23320 0.63 -3.2 257,854 + AZOBR_RS23320 0.63 +0.9 257,854 + AZOBR_RS23320 0.63 +1.2 257,855 - AZOBR_RS23320 0.63 +0.3 257,855 - AZOBR_RS23320 0.63 +0.9 257,855 - AZOBR_RS23320 0.63 -2.8 257,855 - AZOBR_RS23320 0.63 -2.0 257,855 - AZOBR_RS23320 0.63 -1.6 257,855 - AZOBR_RS23320 0.63 -0.6 257,855 - AZOBR_RS23320 0.63 -0.8 257,855 - AZOBR_RS23320 0.63 -0.7 257,977 + AZOBR_RS23320 0.71 +0.3 257,978 - AZOBR_RS23320 0.71 -1.3 258,080 - AZOBR_RS23320 0.78 -0.9 258,182 - AZOBR_RS23320 0.84 +0.4 258,496 + -0.8 258,830 - +0.4 259,227 + AZOBR_RS23325 0.65 +0.4
Or see this region's nucleotide sequence