Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22185

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22170 and AZOBR_RS22175 overlap by 4 nucleotidesAZOBR_RS22175 and AZOBR_RS22180 overlap by 4 nucleotidesAZOBR_RS22180 and AZOBR_RS22185 are separated by 148 nucleotidesAZOBR_RS22185 and AZOBR_RS22190 overlap by 4 nucleotidesAZOBR_RS22190 and AZOBR_RS22195 are separated by 96 nucleotides AZOBR_RS22170: AZOBR_RS22170 - hypothetical protein, at 1,748,062 to 1,748,901 _RS22170 AZOBR_RS22175: AZOBR_RS22175 - hypothetical protein, at 1,748,898 to 1,749,152 _RS22175 AZOBR_RS22180: AZOBR_RS22180 - hypothetical protein, at 1,749,149 to 1,749,484 _RS22180 AZOBR_RS22185: AZOBR_RS22185 - hypothetical protein, at 1,749,633 to 1,751,510 _RS22185 AZOBR_RS22190: AZOBR_RS22190 - hypothetical protein, at 1,751,507 to 1,752,232 _RS22190 AZOBR_RS22195: AZOBR_RS22195 - organic solvent tolerance protein, at 1,752,329 to 1,754,749 _RS22195 Position (kb) 1749 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1748.677 kb on + strand, within AZOBR_RS22170at 1748.677 kb on + strand, within AZOBR_RS22170at 1748.678 kb on - strand, within AZOBR_RS22170at 1748.678 kb on - strand, within AZOBR_RS22170at 1748.764 kb on + strand, within AZOBR_RS22170at 1748.764 kb on + strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.450 kb on - strand, within AZOBR_RS22180at 1749.450 kb on - strand, within AZOBR_RS22180at 1749.482 kb on + strandat 1749.482 kb on + strandat 1749.483 kb on - strandat 1749.483 kb on - strandat 1750.404 kb on + strand, within AZOBR_RS22185at 1750.503 kb on + strand, within AZOBR_RS22185at 1750.503 kb on + strand, within AZOBR_RS22185at 1750.504 kb on - strand, within AZOBR_RS22185at 1750.749 kb on + strand, within AZOBR_RS22185at 1750.750 kb on - strand, within AZOBR_RS22185at 1750.798 kb on - strand, within AZOBR_RS22185at 1750.932 kb on + strand, within AZOBR_RS22185at 1750.933 kb on - strand, within AZOBR_RS22185at 1751.307 kb on + strand, within AZOBR_RS22185at 1751.508 kb on + strandat 1752.266 kb on - strandat 1752.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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1,748,677 + AZOBR_RS22170 0.73 +0.3
1,748,677 + AZOBR_RS22170 0.73 -0.7
1,748,678 - AZOBR_RS22170 0.73 -0.1
1,748,678 - AZOBR_RS22170 0.73 +0.6
1,748,764 + AZOBR_RS22170 0.84 -0.2
1,748,764 + AZOBR_RS22170 0.84 +0.4
1,748,765 - AZOBR_RS22170 0.84 -0.1
1,748,765 - AZOBR_RS22170 0.84 -0.4
1,748,765 - AZOBR_RS22170 0.84 -1.3
1,749,449 + AZOBR_RS22180 0.89 -0.3
1,749,449 + AZOBR_RS22180 0.89 +0.1
1,749,449 + AZOBR_RS22180 0.89 +0.5
1,749,449 + AZOBR_RS22180 0.89 -1.3
1,749,450 - AZOBR_RS22180 0.90 +0.0
1,749,450 - AZOBR_RS22180 0.90 +0.4
1,749,482 + -0.1
1,749,482 + -0.5
1,749,483 - -0.1
1,749,483 - +0.4
1,750,404 + AZOBR_RS22185 0.41 +0.2
1,750,503 + AZOBR_RS22185 0.46 -1.8
1,750,503 + AZOBR_RS22185 0.46 +0.2
1,750,504 - AZOBR_RS22185 0.46 +0.1
1,750,749 + AZOBR_RS22185 0.59 +0.4
1,750,750 - AZOBR_RS22185 0.59 +1.2
1,750,798 - AZOBR_RS22185 0.62 -1.7
1,750,932 + AZOBR_RS22185 0.69 +2.3
1,750,933 - AZOBR_RS22185 0.69 +3.3
1,751,307 + AZOBR_RS22185 0.89 +0.4
1,751,508 + +1.0
1,752,266 - +1.0
1,752,266 - +1.0

Or see this region's nucleotide sequence