Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20740 and AZOBR_RS20745 are separated by 256 nucleotides AZOBR_RS20745 and AZOBR_RS20750 are separated by 29 nucleotides AZOBR_RS20750 and AZOBR_RS20755 overlap by 1 nucleotides AZOBR_RS20755 and AZOBR_RS20760 are separated by 118 nucleotides
AZOBR_RS20740: AZOBR_RS20740 - tRNA methyltransferase, at 1,411,453 to 1,411,926
_RS20740
AZOBR_RS20745: AZOBR_RS20745 - ubiquinol-cytochrome C reductase, at 1,412,183 to 1,412,752
_RS20745
AZOBR_RS20750: AZOBR_RS20750 - cytochrome B, at 1,412,782 to 1,414,050
_RS20750
AZOBR_RS20755: AZOBR_RS20755 - cytochrome C, at 1,414,050 to 1,414,814
_RS20755
AZOBR_RS20760: AZOBR_RS20760 - membrane protein, at 1,414,933 to 1,415,484
_RS20760
Position (kb)
1412
1413
1414
1415 Strain fitness (log2 ratio)
-2
-1
0
1 at 1411.955 kb on - strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.137 kb on + strand at 1412.138 kb on - strand at 1412.159 kb on + strand at 1412.183 kb on - strand at 1412.906 kb on - strand at 1413.127 kb on + strand, within AZOBR_RS20750 at 1413.139 kb on + strand at 1413.140 kb on - strand at 1413.217 kb on + strand, within AZOBR_RS20750 at 1413.665 kb on - strand, within AZOBR_RS20750 at 1413.902 kb on - strand, within AZOBR_RS20750 at 1414.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 1,411,955 - +0.0 1,412,050 + -1.3 1,412,050 + +0.3 1,412,050 + +0.2 1,412,050 + -1.1 1,412,050 + +0.1 1,412,050 + +0.3 1,412,050 + -0.2 1,412,050 + +0.1 1,412,051 - +0.8 1,412,051 - -2.4 1,412,051 - +0.8 1,412,051 - -0.1 1,412,137 + -0.6 1,412,138 - -0.1 1,412,159 + +0.6 1,412,183 - +1.1 1,412,906 - +1.1 1,413,127 + AZOBR_RS20750 0.27 -1.9 1,413,139 + +0.1 1,413,140 - -1.2 1,413,217 + AZOBR_RS20750 0.34 -2.5 1,413,665 - AZOBR_RS20750 0.70 -0.8 1,413,902 - AZOBR_RS20750 0.88 +0.4 1,414,048 + +0.8
Or see this region's nucleotide sequence