Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18275

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18265 and AZOBR_RS18270 are separated by 74 nucleotidesAZOBR_RS18270 and AZOBR_RS18275 are separated by 73 nucleotidesAZOBR_RS18275 and AZOBR_RS18280 are separated by 140 nucleotidesAZOBR_RS18280 and AZOBR_RS18285 are separated by 16 nucleotidesAZOBR_RS18285 and AZOBR_RS18290 overlap by 4 nucleotides AZOBR_RS18265: AZOBR_RS18265 - hypothetical protein, at 865,820 to 866,167 _RS18265 AZOBR_RS18270: AZOBR_RS18270 - hypothetical protein, at 866,242 to 867,069 _RS18270 AZOBR_RS18275: AZOBR_RS18275 - hypothetical protein, at 867,143 to 868,315 _RS18275 AZOBR_RS18280: AZOBR_RS18280 - dioxygenase, at 868,456 to 868,878 _RS18280 AZOBR_RS18285: AZOBR_RS18285 - cation:proton antiporter, at 868,895 to 869,287 _RS18285 AZOBR_RS18290: AZOBR_RS18290 - cation:proton antiporter, at 869,284 to 869,565 _RS18290 Position (kb) 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 866.165 kb on + strandat 866.165 kb on + strandat 866.166 kb on - strandat 866.166 kb on - strandat 866.166 kb on - strandat 866.166 kb on - strandat 866.210 kb on + strandat 866.357 kb on - strand, within AZOBR_RS18270at 866.369 kb on - strand, within AZOBR_RS18270at 866.615 kb on - strand, within AZOBR_RS18270at 866.624 kb on - strandat 866.654 kb on - strand, within AZOBR_RS18270at 866.654 kb on - strand, within AZOBR_RS18270at 866.759 kb on - strand, within AZOBR_RS18270at 866.761 kb on + strand, within AZOBR_RS18270at 866.761 kb on + strand, within AZOBR_RS18270at 866.761 kb on + strand, within AZOBR_RS18270at 866.974 kb on - strand, within AZOBR_RS18270at 867.067 kb on + strandat 867.257 kb on + strandat 867.258 kb on - strandat 867.272 kb on + strand, within AZOBR_RS18275at 867.273 kb on - strand, within AZOBR_RS18275at 867.374 kb on + strand, within AZOBR_RS18275at 867.375 kb on - strand, within AZOBR_RS18275at 867.375 kb on - strand, within AZOBR_RS18275at 867.650 kb on + strand, within AZOBR_RS18275at 867.650 kb on + strand, within AZOBR_RS18275at 867.674 kb on + strand, within AZOBR_RS18275at 867.674 kb on + strand, within AZOBR_RS18275at 867.675 kb on - strand, within AZOBR_RS18275at 867.675 kb on - strand, within AZOBR_RS18275at 867.675 kb on - strand, within AZOBR_RS18275at 867.716 kb on + strand, within AZOBR_RS18275at 867.716 kb on + strand, within AZOBR_RS18275at 867.717 kb on - strand, within AZOBR_RS18275at 867.717 kb on - strand, within AZOBR_RS18275at 867.867 kb on - strand, within AZOBR_RS18275at 867.867 kb on - strand, within AZOBR_RS18275at 867.986 kb on + strand, within AZOBR_RS18275at 867.993 kb on - strand, within AZOBR_RS18275at 867.993 kb on - strand, within AZOBR_RS18275at 868.011 kb on - strand, within AZOBR_RS18275at 868.100 kb on + strand, within AZOBR_RS18275at 868.100 kb on + strand, within AZOBR_RS18275at 868.100 kb on + strand, within AZOBR_RS18275at 868.100 kb on + strand, within AZOBR_RS18275at 868.214 kb on + strandat 868.214 kb on + strandat 868.220 kb on + strandat 868.220 kb on + strandat 868.220 kb on + strandat 868.221 kb on - strandat 868.221 kb on - strandat 868.221 kb on - strandat 868.221 kb on - strandat 868.224 kb on + strandat 868.224 kb on + strandat 868.224 kb on + strandat 868.225 kb on - strandat 868.418 kb on - strandat 868.514 kb on - strand, within AZOBR_RS18280at 868.897 kb on - strandat 869.169 kb on + strand, within AZOBR_RS18285at 869.170 kb on - strand, within AZOBR_RS18285at 869.170 kb on - strand, within AZOBR_RS18285at 869.170 kb on - strand, within AZOBR_RS18285at 869.170 kb on - strand, within AZOBR_RS18285

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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866,165 + -1.1
866,165 + +0.5
866,166 - -3.5
866,166 - +0.6
866,166 - -0.1
866,166 - -3.6
866,210 + -2.1
866,357 - AZOBR_RS18270 0.14 +0.2
866,369 - AZOBR_RS18270 0.15 -0.5
866,615 - AZOBR_RS18270 0.45 +1.8
866,624 - +1.1
866,654 - AZOBR_RS18270 0.50 -1.2
866,654 - AZOBR_RS18270 0.50 -0.9
866,759 - AZOBR_RS18270 0.62 -0.9
866,761 + AZOBR_RS18270 0.63 +0.6
866,761 + AZOBR_RS18270 0.63 +2.5
866,761 + AZOBR_RS18270 0.63 -1.2
866,974 - AZOBR_RS18270 0.88 +0.6
867,067 + -1.5
867,257 + +0.1
867,258 - +0.0
867,272 + AZOBR_RS18275 0.11 -1.4
867,273 - AZOBR_RS18275 0.11 +1.1
867,374 + AZOBR_RS18275 0.20 -1.5
867,375 - AZOBR_RS18275 0.20 -0.3
867,375 - AZOBR_RS18275 0.20 +0.6
867,650 + AZOBR_RS18275 0.43 -3.0
867,650 + AZOBR_RS18275 0.43 -1.0
867,674 + AZOBR_RS18275 0.45 -0.3
867,674 + AZOBR_RS18275 0.45 +0.6
867,675 - AZOBR_RS18275 0.45 -0.0
867,675 - AZOBR_RS18275 0.45 +0.2
867,675 - AZOBR_RS18275 0.45 -2.2
867,716 + AZOBR_RS18275 0.49 +1.0
867,716 + AZOBR_RS18275 0.49 -1.6
867,717 - AZOBR_RS18275 0.49 +0.6
867,717 - AZOBR_RS18275 0.49 +0.3
867,867 - AZOBR_RS18275 0.62 -0.6
867,867 - AZOBR_RS18275 0.62 -0.7
867,986 + AZOBR_RS18275 0.72 +0.3
867,993 - AZOBR_RS18275 0.72 -0.5
867,993 - AZOBR_RS18275 0.72 +0.1
868,011 - AZOBR_RS18275 0.74 +0.3
868,100 + AZOBR_RS18275 0.82 +0.7
868,100 + AZOBR_RS18275 0.82 -1.1
868,100 + AZOBR_RS18275 0.82 +0.2
868,100 + AZOBR_RS18275 0.82 +0.4
868,214 + +0.7
868,214 + +0.5
868,220 + +0.8
868,220 + +1.1
868,220 + +0.1
868,221 - -1.9
868,221 - -1.6
868,221 - -1.4
868,221 - +0.1
868,224 + -0.5
868,224 + -1.0
868,224 + +0.7
868,225 - -0.4
868,418 - +0.2
868,514 - AZOBR_RS18280 0.14 -0.6
868,897 - -0.8
869,169 + AZOBR_RS18285 0.70 +1.0
869,170 - AZOBR_RS18285 0.70 +1.7
869,170 - AZOBR_RS18285 0.70 -2.7
869,170 - AZOBR_RS18285 0.70 +1.3
869,170 - AZOBR_RS18285 0.70 -0.3

Or see this region's nucleotide sequence