Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17575 and AZOBR_RS17580 are separated by 4 nucleotides AZOBR_RS17580 and AZOBR_RS17585 are separated by 32 nucleotides AZOBR_RS17585 and AZOBR_RS17590 are separated by 356 nucleotides AZOBR_RS17590 and AZOBR_RS17595 overlap by 4 nucleotides
AZOBR_RS17575: AZOBR_RS17575 - tRNA-Asn, at 700,057 to 700,132
_RS17575
AZOBR_RS17580: AZOBR_RS17580 - tRNA-Asp, at 700,137 to 700,213
_RS17580
AZOBR_RS17585: AZOBR_RS17585 - hypothetical protein, at 700,246 to 700,692
_RS17585
AZOBR_RS17590: AZOBR_RS17590 - hypothetical protein, at 701,049 to 702,452
_RS17590
AZOBR_RS17595: AZOBR_RS17595 - MFS transporter, at 702,449 to 704,101
_RS17595
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1
2 at 700.065 kb on - strand, within AZOBR_RS17575 at 700.357 kb on - strand, within AZOBR_RS17585 at 700.891 kb on + strand at 700.891 kb on + strand at 700.891 kb on + strand at 700.892 kb on - strand at 700.954 kb on - strand at 700.954 kb on - strand at 700.997 kb on - strand at 701.140 kb on + strand at 701.209 kb on + strand, within AZOBR_RS17590 at 701.259 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.260 kb on + strand, within AZOBR_RS17590 at 701.261 kb on - strand, within AZOBR_RS17590 at 701.398 kb on + strand, within AZOBR_RS17590 at 701.694 kb on - strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.707 kb on + strand, within AZOBR_RS17590 at 701.708 kb on - strand, within AZOBR_RS17590 at 701.708 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.711 kb on - strand, within AZOBR_RS17590 at 701.758 kb on + strand, within AZOBR_RS17590 at 701.759 kb on - strand, within AZOBR_RS17590 at 701.912 kb on - strand, within AZOBR_RS17590 at 701.921 kb on + strand, within AZOBR_RS17590 at 701.921 kb on + strand, within AZOBR_RS17590 at 701.922 kb on - strand, within AZOBR_RS17590 at 701.922 kb on - strand, within AZOBR_RS17590 at 701.941 kb on + strand, within AZOBR_RS17590 at 701.942 kb on - strand, within AZOBR_RS17590 at 702.157 kb on + strand, within AZOBR_RS17590 at 702.332 kb on - strand at 702.332 kb on - strand at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595 at 703.266 kb on + strand, within AZOBR_RS17595
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 700,065 - AZOBR_RS17575 0.11 +1.1 700,357 - AZOBR_RS17585 0.25 +0.7 700,891 + +0.6 700,891 + +0.6 700,891 + +1.1 700,892 - +0.0 700,954 - -0.3 700,954 - -1.3 700,997 - -0.2 701,140 + -0.3 701,209 + AZOBR_RS17590 0.11 +0.3 701,259 + AZOBR_RS17590 0.15 +1.6 701,260 + AZOBR_RS17590 0.15 +0.5 701,260 + AZOBR_RS17590 0.15 +0.1 701,260 + AZOBR_RS17590 0.15 +0.2 701,261 - AZOBR_RS17590 0.15 +0.1 701,398 + AZOBR_RS17590 0.25 -0.5 701,694 - AZOBR_RS17590 0.46 -0.3 701,707 + AZOBR_RS17590 0.47 +0.8 701,707 + AZOBR_RS17590 0.47 +0.5 701,707 + AZOBR_RS17590 0.47 +0.5 701,707 + AZOBR_RS17590 0.47 +0.1 701,708 - AZOBR_RS17590 0.47 +0.8 701,708 - AZOBR_RS17590 0.47 +0.7 701,711 - AZOBR_RS17590 0.47 +0.4 701,711 - AZOBR_RS17590 0.47 -0.1 701,711 - AZOBR_RS17590 0.47 +0.5 701,758 + AZOBR_RS17590 0.50 +0.4 701,759 - AZOBR_RS17590 0.51 -0.1 701,912 - AZOBR_RS17590 0.61 +2.0 701,921 + AZOBR_RS17590 0.62 -0.2 701,921 + AZOBR_RS17590 0.62 -1.3 701,922 - AZOBR_RS17590 0.62 +0.5 701,922 - AZOBR_RS17590 0.62 -1.8 701,941 + AZOBR_RS17590 0.64 -0.8 701,942 - AZOBR_RS17590 0.64 -0.5 702,157 + AZOBR_RS17590 0.79 -1.1 702,332 - -2.4 702,332 - +0.2 703,266 + AZOBR_RS17595 0.49 -1.2 703,266 + AZOBR_RS17595 0.49 -0.2 703,266 + AZOBR_RS17595 0.49 +0.2 703,266 + AZOBR_RS17595 0.49 +2.3 703,266 + AZOBR_RS17595 0.49 -0.7 703,266 + AZOBR_RS17595 0.49 +0.1 703,266 + AZOBR_RS17595 0.49 -0.8
Or see this region's nucleotide sequence