Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17095 and AZOBR_RS17100 overlap by 12 nucleotides AZOBR_RS17100 and AZOBR_RS17105 are separated by 158 nucleotides AZOBR_RS17105 and AZOBR_RS17110 are separated by 182 nucleotides AZOBR_RS17110 and AZOBR_RS17115 overlap by 4 nucleotides
AZOBR_RS17095: AZOBR_RS17095 - exported protein of unknown function, at 592,056 to 592,475
_RS17095
AZOBR_RS17100: AZOBR_RS17100 - AraC family transcriptional regulator, at 592,464 to 593,231
_RS17100
AZOBR_RS17105: AZOBR_RS17105 - Fosmidomycin resistance protein, at 593,390 to 594,595
_RS17105
AZOBR_RS17110: AZOBR_RS17110 - flavodoxin, at 594,778 to 595,260
_RS17110
AZOBR_RS17115: AZOBR_RS17115 - hypothetical protein, at 595,257 to 595,586
_RS17115
Position (kb) 593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.492 kb on + strand at 592.493 kb on - strand at 592.493 kb on - strand at 592.556 kb on - strand, within AZOBR_RS17100 at 592.991 kb on - strand, within AZOBR_RS17100 at 593.307 kb on + strand at 593.307 kb on + strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.308 kb on - strand at 593.507 kb on + strand at 593.570 kb on + strand, within AZOBR_RS17105 at 593.571 kb on - strand, within AZOBR_RS17105 at 593.571 kb on - strand, within AZOBR_RS17105 at 593.571 kb on - strand, within AZOBR_RS17105 at 593.702 kb on + strand, within AZOBR_RS17105 at 593.873 kb on + strand, within AZOBR_RS17105 at 593.873 kb on + strand, within AZOBR_RS17105 at 593.873 kb on + strand, within AZOBR_RS17105 at 593.874 kb on - strand, within AZOBR_RS17105 at 593.874 kb on - strand, within AZOBR_RS17105 at 593.967 kb on - strand, within AZOBR_RS17105 at 594.086 kb on + strand, within AZOBR_RS17105 at 594.086 kb on + strand, within AZOBR_RS17105 at 594.086 kb on + strand, within AZOBR_RS17105 at 594.086 kb on + strand, within AZOBR_RS17105 at 594.087 kb on - strand, within AZOBR_RS17105 at 594.113 kb on + strand, within AZOBR_RS17105 at 594.113 kb on + strand, within AZOBR_RS17105 at 594.113 kb on + strand, within AZOBR_RS17105 at 594.114 kb on - strand, within AZOBR_RS17105 at 594.116 kb on + strand, within AZOBR_RS17105 at 594.116 kb on + strand, within AZOBR_RS17105 at 594.117 kb on - strand, within AZOBR_RS17105 at 594.117 kb on - strand, within AZOBR_RS17105 at 594.117 kb on - strand, within AZOBR_RS17105 at 594.383 kb on + strand, within AZOBR_RS17105 at 594.384 kb on - strand, within AZOBR_RS17105 at 594.796 kb on + strand at 594.796 kb on + strand at 594.796 kb on + strand at 594.796 kb on + strand at 594.796 kb on + strand at 594.796 kb on + strand at 594.797 kb on - strand at 594.935 kb on - strand, within AZOBR_RS17110 at 595.082 kb on - strand, within AZOBR_RS17110 at 595.082 kb on - strand, within AZOBR_RS17110 at 595.139 kb on - strand, within AZOBR_RS17110 at 595.139 kb on - strand, within AZOBR_RS17110 at 595.312 kb on - strand, within AZOBR_RS17115 at 595.410 kb on + strand, within AZOBR_RS17115 at 595.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 592,492 + -0.5 592,492 + +0.6 592,492 + -0.7 592,492 + +1.7 592,492 + +0.7 592,492 + +0.5 592,492 + +0.7 592,493 - -0.3 592,493 - +1.5 592,556 - AZOBR_RS17100 0.12 -0.5 592,991 - AZOBR_RS17100 0.69 +0.1 593,307 + +1.0 593,307 + -0.2 593,308 - -0.5 593,308 - -0.2 593,308 - +0.7 593,308 - +0.2 593,308 - +0.1 593,308 - +1.0 593,507 + -0.5 593,570 + AZOBR_RS17105 0.15 +0.3 593,571 - AZOBR_RS17105 0.15 -2.3 593,571 - AZOBR_RS17105 0.15 -1.7 593,571 - AZOBR_RS17105 0.15 +2.1 593,702 + AZOBR_RS17105 0.26 -0.8 593,873 + AZOBR_RS17105 0.40 +1.0 593,873 + AZOBR_RS17105 0.40 +1.1 593,873 + AZOBR_RS17105 0.40 +0.5 593,874 - AZOBR_RS17105 0.40 +1.2 593,874 - AZOBR_RS17105 0.40 -0.5 593,967 - AZOBR_RS17105 0.48 +0.5 594,086 + AZOBR_RS17105 0.58 +1.1 594,086 + AZOBR_RS17105 0.58 -0.3 594,086 + AZOBR_RS17105 0.58 -1.3 594,086 + AZOBR_RS17105 0.58 +0.3 594,087 - AZOBR_RS17105 0.58 +0.5 594,113 + AZOBR_RS17105 0.60 +1.1 594,113 + AZOBR_RS17105 0.60 +0.5 594,113 + AZOBR_RS17105 0.60 +1.5 594,114 - AZOBR_RS17105 0.60 +0.3 594,116 + AZOBR_RS17105 0.60 +1.3 594,116 + AZOBR_RS17105 0.60 +0.8 594,117 - AZOBR_RS17105 0.60 -0.1 594,117 - AZOBR_RS17105 0.60 +0.1 594,117 - AZOBR_RS17105 0.60 +0.5 594,383 + AZOBR_RS17105 0.82 +0.9 594,384 - AZOBR_RS17105 0.82 -0.1 594,796 + -0.3 594,796 + -0.5 594,796 + -1.7 594,796 + -1.2 594,796 + +3.1 594,796 + -0.2 594,797 - -0.2 594,935 - AZOBR_RS17110 0.33 +1.1 595,082 - AZOBR_RS17110 0.63 +0.0 595,082 - AZOBR_RS17110 0.63 -1.4 595,139 - AZOBR_RS17110 0.75 -0.0 595,139 - AZOBR_RS17110 0.75 +0.5 595,312 - AZOBR_RS17115 0.17 -0.2 595,410 + AZOBR_RS17115 0.46 -1.1 595,555 - +0.8
Or see this region's nucleotide sequence