Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16525

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16520 and AZOBR_RS16525 are separated by 210 nucleotidesAZOBR_RS16525 and AZOBR_RS16530 are separated by 303 nucleotides AZOBR_RS16520: AZOBR_RS16520 - LysR family transcriptional regulator, at 456,903 to 457,820 _RS16520 AZOBR_RS16525: AZOBR_RS16525 - hypothetical protein, at 458,031 to 458,855 _RS16525 AZOBR_RS16530: AZOBR_RS16530 - membrane protein, at 459,159 to 460,349 _RS16530 Position (kb) 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 457.051 kb on - strand, within AZOBR_RS16520at 457.207 kb on - strand, within AZOBR_RS16520at 457.413 kb on + strand, within AZOBR_RS16520at 457.645 kb on - strand, within AZOBR_RS16520at 457.645 kb on - strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.731 kb on + strandat 457.732 kb on - strandat 458.049 kb on + strandat 458.050 kb on - strandat 458.149 kb on - strand, within AZOBR_RS16525at 458.149 kb on - strand, within AZOBR_RS16525at 458.149 kb on - strand, within AZOBR_RS16525at 458.226 kb on + strand, within AZOBR_RS16525at 458.226 kb on + strand, within AZOBR_RS16525at 458.227 kb on - strand, within AZOBR_RS16525at 458.227 kb on - strand, within AZOBR_RS16525at 458.325 kb on + strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.460 kb on - strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.524 kb on - strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.530 kb on - strand, within AZOBR_RS16525at 458.530 kb on - strand, within AZOBR_RS16525at 458.622 kb on + strand, within AZOBR_RS16525at 458.623 kb on - strand, within AZOBR_RS16525at 458.631 kb on + strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.634 kb on - strand, within AZOBR_RS16525at 458.634 kb on - strand, within AZOBR_RS16525at 458.945 kb on - strandat 459.078 kb on + strandat 459.078 kb on + strandat 459.079 kb on - strandat 459.229 kb on + strandat 459.229 kb on + strandat 459.230 kb on - strandat 459.230 kb on - strandat 459.298 kb on + strand, within AZOBR_RS16530at 459.299 kb on - strand, within AZOBR_RS16530at 459.775 kb on + strand, within AZOBR_RS16530at 459.776 kb on - strand, within AZOBR_RS16530

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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457,051 - AZOBR_RS16520 0.16 +2.3
457,207 - AZOBR_RS16520 0.33 +1.3
457,413 + AZOBR_RS16520 0.56 -2.8
457,645 - AZOBR_RS16520 0.81 +0.0
457,645 - AZOBR_RS16520 0.81 -1.9
457,647 + AZOBR_RS16520 0.81 -0.3
457,647 + AZOBR_RS16520 0.81 -0.4
457,647 + AZOBR_RS16520 0.81 +0.5
457,647 + AZOBR_RS16520 0.81 +1.0
457,647 + AZOBR_RS16520 0.81 -0.1
457,648 - AZOBR_RS16520 0.81 +0.2
457,648 - AZOBR_RS16520 0.81 -2.7
457,648 - AZOBR_RS16520 0.81 +0.8
457,648 - AZOBR_RS16520 0.81 +0.2
457,731 + +1.0
457,732 - +1.3
458,049 + -0.6
458,050 - -0.1
458,149 - AZOBR_RS16525 0.14 -1.4
458,149 - AZOBR_RS16525 0.14 -0.6
458,149 - AZOBR_RS16525 0.14 +1.6
458,226 + AZOBR_RS16525 0.24 +2.3
458,226 + AZOBR_RS16525 0.24 +0.2
458,227 - AZOBR_RS16525 0.24 -0.5
458,227 - AZOBR_RS16525 0.24 +0.3
458,325 + AZOBR_RS16525 0.36 -1.0
458,350 - AZOBR_RS16525 0.39 -1.1
458,350 - AZOBR_RS16525 0.39 +1.7
458,350 - AZOBR_RS16525 0.39 +0.3
458,460 - AZOBR_RS16525 0.52 -0.6
458,523 + AZOBR_RS16525 0.60 -1.2
458,523 + AZOBR_RS16525 0.60 +0.6
458,523 + AZOBR_RS16525 0.60 -2.6
458,523 + AZOBR_RS16525 0.60 -3.5
458,523 + AZOBR_RS16525 0.60 -0.5
458,523 + AZOBR_RS16525 0.60 -0.5
458,523 + AZOBR_RS16525 0.60 +0.5
458,523 + AZOBR_RS16525 0.60 +0.5
458,523 + AZOBR_RS16525 0.60 -0.7
458,524 - AZOBR_RS16525 0.60 -0.7
458,529 + AZOBR_RS16525 0.60 +0.9
458,529 + AZOBR_RS16525 0.60 +0.4
458,529 + AZOBR_RS16525 0.60 -0.7
458,529 + AZOBR_RS16525 0.60 +0.5
458,529 + AZOBR_RS16525 0.60 -0.2
458,529 + AZOBR_RS16525 0.60 -0.4
458,529 + AZOBR_RS16525 0.60 +0.3
458,530 - AZOBR_RS16525 0.60 +0.0
458,530 - AZOBR_RS16525 0.60 -0.3
458,622 + AZOBR_RS16525 0.72 -0.3
458,623 - AZOBR_RS16525 0.72 -2.5
458,631 + AZOBR_RS16525 0.73 +1.1
458,632 - AZOBR_RS16525 0.73 +0.9
458,632 - AZOBR_RS16525 0.73 -0.5
458,632 - AZOBR_RS16525 0.73 +0.2
458,632 - AZOBR_RS16525 0.73 -0.9
458,633 + AZOBR_RS16525 0.73 -2.9
458,633 + AZOBR_RS16525 0.73 -0.1
458,633 + AZOBR_RS16525 0.73 -2.9
458,634 - AZOBR_RS16525 0.73 -0.3
458,634 - AZOBR_RS16525 0.73 -0.6
458,945 - -1.2
459,078 + +0.5
459,078 + -0.2
459,079 - +0.3
459,229 + -2.6
459,229 + +0.8
459,230 - +1.0
459,230 - +1.0
459,298 + AZOBR_RS16530 0.12 -0.3
459,299 - AZOBR_RS16530 0.12 +0.0
459,775 + AZOBR_RS16530 0.52 -0.0
459,776 - AZOBR_RS16530 0.52 +0.1

Or see this region's nucleotide sequence