Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16215 and AZOBR_RS16220 are separated by 166 nucleotides AZOBR_RS16220 and AZOBR_RS16225 are separated by 264 nucleotides
AZOBR_RS16215: AZOBR_RS16215 - aspartyl-tRNA synthetase, at 386,405 to 388,234
_RS16215
AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567
_RS16220
AZOBR_RS16225: AZOBR_RS16225 - hypothetical protein, at 389,832 to 391,121
_RS16225
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 388.389 kb on + strand at 388.389 kb on + strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.465 kb on - strand at 388.503 kb on + strand at 388.504 kb on - strand at 388.504 kb on - strand at 388.849 kb on - strand, within AZOBR_RS16220 at 388.849 kb on - strand, within AZOBR_RS16220 at 388.884 kb on + strand, within AZOBR_RS16220 at 388.971 kb on + strand, within AZOBR_RS16220 at 389.565 kb on + strand at 389.566 kb on - strand at 389.716 kb on + strand at 389.719 kb on + strand at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.096 kb on + strand, within AZOBR_RS16225 at 390.141 kb on + strand, within AZOBR_RS16225 at 390.142 kb on - strand, within AZOBR_RS16225 at 390.235 kb on - strand, within AZOBR_RS16225 at 390.252 kb on + strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.475 kb on - strand, within AZOBR_RS16225 at 390.486 kb on + strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.487 kb on - strand, within AZOBR_RS16225 at 390.529 kb on - strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.561 kb on + strand, within AZOBR_RS16225 at 390.562 kb on - strand, within AZOBR_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 388,389 + +1.1 388,389 + -0.1 388,465 - +2.5 388,465 - -1.1 388,465 - -0.5 388,503 + -0.1 388,504 - +3.5 388,504 - +0.9 388,849 - AZOBR_RS16220 0.38 -1.9 388,849 - AZOBR_RS16220 0.38 -0.2 388,884 + AZOBR_RS16220 0.41 -1.8 388,971 + AZOBR_RS16220 0.49 -2.2 389,565 + +0.2 389,566 - -3.0 389,716 + +0.2 389,719 + +0.3 390,096 + AZOBR_RS16225 0.20 +1.3 390,096 + AZOBR_RS16225 0.20 +0.8 390,096 + AZOBR_RS16225 0.20 -0.3 390,141 + AZOBR_RS16225 0.24 -3.2 390,142 - AZOBR_RS16225 0.24 +0.5 390,235 - AZOBR_RS16225 0.31 -0.3 390,252 + AZOBR_RS16225 0.33 +1.0 390,475 - AZOBR_RS16225 0.50 -0.3 390,475 - AZOBR_RS16225 0.50 -0.7 390,486 + AZOBR_RS16225 0.51 +0.2 390,487 - AZOBR_RS16225 0.51 -0.6 390,487 - AZOBR_RS16225 0.51 +0.3 390,487 - AZOBR_RS16225 0.51 +1.0 390,487 - AZOBR_RS16225 0.51 +0.4 390,529 - AZOBR_RS16225 0.54 +0.9 390,561 + AZOBR_RS16225 0.57 -3.0 390,561 + AZOBR_RS16225 0.57 -0.5 390,561 + AZOBR_RS16225 0.57 +0.6 390,561 + AZOBR_RS16225 0.57 +0.3 390,562 - AZOBR_RS16225 0.57 -0.2
Or see this region's nucleotide sequence