Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15905 and AZOBR_RS15910 are separated by 32 nucleotides AZOBR_RS15910 and AZOBR_RS15915 are separated by 164 nucleotides
AZOBR_RS15905: AZOBR_RS15905 - 2-hydroxyhepta-2 4-diene-1 7-dioate isomerase, at 321,863 to 322,714
_RS15905
AZOBR_RS15910: AZOBR_RS15910 - hypothetical protein, at 322,747 to 324,030
_RS15910
AZOBR_RS15915: AZOBR_RS15915 - gluconate TRAP transporter, periplasmic solute-binding component <small>(from data)</small>, at 324,195 to 325,208
_RS15915
Position (kb) 322
323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 321.748 kb on + strand at 321.748 kb on + strand at 321.749 kb on - strand at 321.857 kb on - strand at 322.101 kb on - strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.539 kb on - strand, within AZOBR_RS15905 at 322.936 kb on + strand, within AZOBR_RS15910 at 322.936 kb on + strand, within AZOBR_RS15910 at 323.000 kb on - strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.692 kb on + strand, within AZOBR_RS15910 at 323.788 kb on + strand, within AZOBR_RS15910 at 323.789 kb on - strand, within AZOBR_RS15910 at 323.922 kb on + strand at 324.197 kb on - strand at 324.497 kb on - strand, within AZOBR_RS15915 at 324.520 kb on + strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.535 kb on + strand, within AZOBR_RS15915 at 324.536 kb on - strand, within AZOBR_RS15915 at 324.667 kb on + strand, within AZOBR_RS15915 at 324.668 kb on - strand, within AZOBR_RS15915
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 321,748 + -0.9 321,748 + +1.3 321,749 - -2.5 321,857 - +0.1 322,101 - AZOBR_RS15905 0.28 +0.4 322,538 + AZOBR_RS15905 0.79 +0.0 322,538 + AZOBR_RS15905 0.79 -0.8 322,539 - AZOBR_RS15905 0.79 -2.5 322,936 + AZOBR_RS15910 0.15 +0.1 322,936 + AZOBR_RS15910 0.15 +0.4 323,000 - AZOBR_RS15910 0.20 -0.5 323,215 + AZOBR_RS15910 0.36 +0.6 323,215 + AZOBR_RS15910 0.36 -0.3 323,692 + AZOBR_RS15910 0.74 -1.0 323,788 + AZOBR_RS15910 0.81 +0.5 323,789 - AZOBR_RS15910 0.81 +0.6 323,922 + -0.7 324,197 - -3.1 324,497 - AZOBR_RS15915 0.30 +0.0 324,520 + AZOBR_RS15915 0.32 -1.1 324,521 - AZOBR_RS15915 0.32 -0.0 324,521 - AZOBR_RS15915 0.32 +0.6 324,535 + AZOBR_RS15915 0.34 -2.1 324,536 - AZOBR_RS15915 0.34 -0.6 324,667 + AZOBR_RS15915 0.47 -2.6 324,668 - AZOBR_RS15915 0.47 +0.3
Or see this region's nucleotide sequence