Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15360

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15345 and AZOBR_RS15350 are separated by 235 nucleotidesAZOBR_RS15350 and AZOBR_RS15355 overlap by 4 nucleotidesAZOBR_RS15355 and AZOBR_RS15360 overlap by 41 nucleotidesAZOBR_RS15360 and AZOBR_RS15365 are separated by 155 nucleotides AZOBR_RS15345: AZOBR_RS15345 - hypothetical protein, at 206,098 to 206,454 _RS15345 AZOBR_RS15350: AZOBR_RS15350 - hypothetical protein, at 206,690 to 206,944 _RS15350 AZOBR_RS15355: AZOBR_RS15355 - hypothetical protein, at 206,941 to 207,288 _RS15355 AZOBR_RS15360: AZOBR_RS15360 - exported protein of unknown function, at 207,248 to 207,553 _RS15360 AZOBR_RS15365: AZOBR_RS15365 - single-stranded DNA-binding protein, at 207,709 to 208,206 _RS15365 Position (kb) 207 208Strain fitness (log2 ratio) -1 0 1 2at 206.392 kb on + strand, within AZOBR_RS15345at 206.968 kb on + strandat 206.968 kb on + strandat 207.399 kb on + strand, within AZOBR_RS15360at 208.221 kb on - strandat 208.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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206,392 + AZOBR_RS15345 0.82 -0.1
206,968 + +2.3
206,968 + -0.1
207,399 + AZOBR_RS15360 0.49 +1.2
208,221 - +1.7
208,465 - +0.2

Or see this region's nucleotide sequence