Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15250

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15245 and AZOBR_RS15250 are separated by 881 nucleotidesAZOBR_RS15250 and AZOBR_RS15255 are separated by 852 nucleotides AZOBR_RS15245: AZOBR_RS15245 - hypothetical protein, at 190,022 to 190,213 _RS15245 AZOBR_RS15250: AZOBR_RS15250 - nuclease, at 191,095 to 191,781 _RS15250 AZOBR_RS15255: AZOBR_RS15255 - hypothetical protein, at 192,634 to 192,873 _RS15255 Position (kb) 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 190.168 kb on + strand, within AZOBR_RS15245at 190.489 kb on - strandat 190.511 kb on + strandat 190.559 kb on + strandat 191.036 kb on + strandat 191.036 kb on + strandat 191.063 kb on + strandat 191.063 kb on + strandat 191.063 kb on + strandat 191.063 kb on + strandat 191.063 kb on + strandat 191.064 kb on - strandat 191.064 kb on - strandat 191.064 kb on - strandat 191.064 kb on - strandat 191.064 kb on - strandat 191.069 kb on + strandat 191.069 kb on + strandat 191.070 kb on - strandat 191.070 kb on - strandat 191.092 kb on - strandat 191.189 kb on + strand, within AZOBR_RS15250at 191.190 kb on - strand, within AZOBR_RS15250at 191.213 kb on + strand, within AZOBR_RS15250at 191.213 kb on + strand, within AZOBR_RS15250at 191.213 kb on + strand, within AZOBR_RS15250at 191.213 kb on + strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.214 kb on - strand, within AZOBR_RS15250at 191.423 kb on + strand, within AZOBR_RS15250at 191.424 kb on - strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.435 kb on + strand, within AZOBR_RS15250at 191.445 kb on - strand, within AZOBR_RS15250at 191.526 kb on - strand, within AZOBR_RS15250at 192.006 kb on - strandat 192.160 kb on + strandat 192.422 kb on + strandat 192.467 kb on - strandat 192.766 kb on - strand, within AZOBR_RS15255at 192.766 kb on - strand, within AZOBR_RS15255

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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190,168 + AZOBR_RS15245 0.76 -1.0
190,489 - -1.4
190,511 + -1.1
190,559 + -0.5
191,036 + -0.2
191,036 + -2.6
191,063 + -0.7
191,063 + -0.6
191,063 + +0.3
191,063 + -0.6
191,063 + -0.7
191,064 - -1.6
191,064 - -3.2
191,064 - -0.8
191,064 - -0.1
191,064 - -0.5
191,069 + -0.6
191,069 + -0.1
191,070 - -0.2
191,070 - -0.9
191,092 - -1.6
191,189 + AZOBR_RS15250 0.14 -1.4
191,190 - AZOBR_RS15250 0.14 -2.7
191,213 + AZOBR_RS15250 0.17 -1.0
191,213 + AZOBR_RS15250 0.17 -0.6
191,213 + AZOBR_RS15250 0.17 -3.0
191,213 + AZOBR_RS15250 0.17 +0.0
191,214 - AZOBR_RS15250 0.17 -0.8
191,214 - AZOBR_RS15250 0.17 -1.6
191,214 - AZOBR_RS15250 0.17 -0.9
191,214 - AZOBR_RS15250 0.17 -0.9
191,214 - AZOBR_RS15250 0.17 -0.5
191,214 - AZOBR_RS15250 0.17 +0.5
191,214 - AZOBR_RS15250 0.17 -1.8
191,423 + AZOBR_RS15250 0.48 +0.1
191,424 - AZOBR_RS15250 0.48 -1.7
191,435 + AZOBR_RS15250 0.49 -0.5
191,435 + AZOBR_RS15250 0.49 -2.8
191,435 + AZOBR_RS15250 0.49 +0.4
191,435 + AZOBR_RS15250 0.49 +0.0
191,435 + AZOBR_RS15250 0.49 -0.7
191,435 + AZOBR_RS15250 0.49 +0.6
191,445 - AZOBR_RS15250 0.51 +0.4
191,526 - AZOBR_RS15250 0.63 -2.0
192,006 - -4.3
192,160 + -1.2
192,422 + -1.6
192,467 - -0.2
192,766 - AZOBR_RS15255 0.55 +1.8
192,766 - AZOBR_RS15255 0.55 +0.3

Or see this region's nucleotide sequence