Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11350
Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.04 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,384,710 | + | AZOBR_RS11345 | 0.24 | -1.7 | |
2,384,755 | + | AZOBR_RS11345 | 0.28 | +1.0 | |
2,384,756 | - | AZOBR_RS11345 | 0.29 | -0.4 | |
2,385,119 | - | AZOBR_RS11345 | 0.61 | -0.3 | |
2,385,119 | - | AZOBR_RS11345 | 0.61 | +0.4 | |
2,385,238 | + | AZOBR_RS11345 | 0.71 | -0.0 | |
2,385,526 | + | +3.2 | |||
2,385,526 | + | -1.5 | |||
2,385,527 | - | +0.4 | |||
2,385,527 | - | +0.7 | |||
2,385,565 | + | +0.3 | |||
2,385,565 | + | +1.3 | |||
2,385,565 | + | +0.3 | |||
2,385,565 | + | +0.2 | |||
2,385,566 | - | +1.5 | |||
2,385,566 | - | -1.7 | |||
2,385,566 | - | -0.9 | |||
2,385,772 | + | AZOBR_RS11350 | 0.24 | +1.8 | |
2,385,773 | - | AZOBR_RS11350 | 0.25 | +0.5 | |
2,385,985 | + | AZOBR_RS11350 | 0.50 | +0.1 | |
2,385,986 | - | AZOBR_RS11350 | 0.50 | +0.0 | |
2,386,201 | + | AZOBR_RS11350 | 0.76 | +2.0 | |
2,386,202 | - | AZOBR_RS11350 | 0.76 | +0.2 | |
2,386,202 | - | AZOBR_RS11350 | 0.76 | -2.4 | |
2,386,453 | + | -0.0 | |||
2,386,453 | + | -0.2 | |||
2,386,601 | - | +1.8 | |||
2,386,617 | - | +1.7 | |||
2,386,618 | + | -2.5 | |||
2,386,945 | - | AZOBR_RS11355 | 0.35 | +2.3 | |
2,387,169 | + | AZOBR_RS11355 | 0.59 | +1.2 | |
2,387,170 | - | AZOBR_RS11355 | 0.59 | +1.7 |
Or see this region's nucleotide sequence