Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11090

Experiment: Paraquat dichloride 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11080 and AZOBR_RS11085 are separated by 116 nucleotidesAZOBR_RS11085 and AZOBR_RS11090 are separated by 104 nucleotidesAZOBR_RS11090 and AZOBR_RS11095 are separated by 447 nucleotides AZOBR_RS11080: AZOBR_RS11080 - ATPase AAA, at 2,331,448 to 2,332,293 _RS11080 AZOBR_RS11085: AZOBR_RS11085 - hypothetical protein, at 2,332,410 to 2,332,727 _RS11085 AZOBR_RS11090: AZOBR_RS11090 - alanyl-tRNA synthetase, at 2,332,832 to 2,335,501 _RS11090 AZOBR_RS11095: AZOBR_RS11095 - recombinase RecA, at 2,335,949 to 2,337,028 _RS11095 Position (kb) 2332 2333 2334 2335 2336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.875 kb on + strand, within AZOBR_RS11080at 2331.876 kb on - strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.013 kb on + strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.014 kb on - strand, within AZOBR_RS11080at 2332.080 kb on - strand, within AZOBR_RS11080at 2332.086 kb on - strand, within AZOBR_RS11080at 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.268 kb on + strandat 2332.742 kb on + strandat 2332.742 kb on + strandat 2335.854 kb on - strandat 2336.074 kb on - strand, within AZOBR_RS11095at 2336.119 kb on - strand, within AZOBR_RS11095at 2336.343 kb on + strand, within AZOBR_RS11095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
remove
2,331,875 + AZOBR_RS11080 0.50 -1.1
2,331,875 + AZOBR_RS11080 0.50 -2.3
2,331,875 + AZOBR_RS11080 0.50 +0.6
2,331,876 - AZOBR_RS11080 0.51 -0.7
2,332,013 + AZOBR_RS11080 0.67 +0.1
2,332,013 + AZOBR_RS11080 0.67 -0.4
2,332,013 + AZOBR_RS11080 0.67 +0.5
2,332,013 + AZOBR_RS11080 0.67 +0.3
2,332,013 + AZOBR_RS11080 0.67 +1.9
2,332,014 - AZOBR_RS11080 0.67 -1.2
2,332,014 - AZOBR_RS11080 0.67 -0.5
2,332,014 - AZOBR_RS11080 0.67 +1.6
2,332,014 - AZOBR_RS11080 0.67 -1.1
2,332,014 - AZOBR_RS11080 0.67 +0.5
2,332,080 - AZOBR_RS11080 0.75 -0.8
2,332,086 - AZOBR_RS11080 0.75 -3.7
2,332,268 + +0.5
2,332,268 + -0.0
2,332,268 + +1.2
2,332,268 + -1.0
2,332,742 + +1.1
2,332,742 + -3.3
2,335,854 - +2.0
2,336,074 - AZOBR_RS11095 0.12 -1.4
2,336,119 - AZOBR_RS11095 0.16 -2.4
2,336,343 + AZOBR_RS11095 0.36 -0.8

Or see this region's nucleotide sequence