Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08830 and AZOBR_RS08835 overlap by 4 nucleotides AZOBR_RS08835 and AZOBR_RS08840 overlap by 4 nucleotides
AZOBR_RS08830: AZOBR_RS08830 - putrescine/spermidine ABC transporter permease, at 1,847,716 to 1,848,549
_RS08830
AZOBR_RS08835: AZOBR_RS08835 - putrescine/spermidine ABC transporter permease, at 1,848,546 to 1,849,469
_RS08835
AZOBR_RS08840: AZOBR_RS08840 - ABC transporter ATP-binding protein, at 1,849,466 to 1,850,629
_RS08840
Position (kb)
1848
1849
1850 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1847.573 kb on + strand at 1847.682 kb on + strand at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.468 kb on - strand at 1848.494 kb on + strand at 1848.494 kb on + strand at 1848.495 kb on - strand at 1848.495 kb on - strand at 1848.506 kb on + strand at 1848.916 kb on + strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1849.045 kb on + strand, within AZOBR_RS08835 at 1849.046 kb on - strand, within AZOBR_RS08835 at 1849.136 kb on - strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.217 kb on - strand, within AZOBR_RS08835 at 1849.243 kb on + strand, within AZOBR_RS08835 at 1849.553 kb on + strand at 1849.553 kb on + strand at 1849.554 kb on - strand at 1849.605 kb on + strand, within AZOBR_RS08840 at 1849.605 kb on + strand, within AZOBR_RS08840 at 1849.605 kb on + strand, within AZOBR_RS08840 at 1849.626 kb on + strand, within AZOBR_RS08840 at 1849.627 kb on - strand, within AZOBR_RS08840 at 1849.779 kb on + strand, within AZOBR_RS08840 at 1849.780 kb on - strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.905 kb on + strand, within AZOBR_RS08840 at 1849.906 kb on - strand, within AZOBR_RS08840 at 1849.906 kb on - strand, within AZOBR_RS08840 at 1849.906 kb on - strand, within AZOBR_RS08840 at 1849.906 kb on - strand, within AZOBR_RS08840 at 1850.319 kb on + strand, within AZOBR_RS08840 at 1850.319 kb on + strand, within AZOBR_RS08840 at 1850.319 kb on + strand, within AZOBR_RS08840 at 1850.320 kb on - strand, within AZOBR_RS08840
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 1,847,573 + +0.2 1,847,682 + -0.3 1,848,104 + AZOBR_RS08830 0.47 -0.0 1,848,104 + AZOBR_RS08830 0.47 +0.2 1,848,105 - AZOBR_RS08830 0.47 +1.0 1,848,105 - AZOBR_RS08830 0.47 +1.7 1,848,105 - AZOBR_RS08830 0.47 +1.9 1,848,105 - AZOBR_RS08830 0.47 -0.8 1,848,468 - +2.1 1,848,494 + +1.9 1,848,494 + +3.1 1,848,495 - -3.8 1,848,495 - +2.0 1,848,506 + +1.1 1,848,916 + AZOBR_RS08835 0.40 -2.8 1,848,917 - AZOBR_RS08835 0.40 -0.8 1,848,917 - AZOBR_RS08835 0.40 +4.3 1,848,917 - +2.0 1,848,922 + AZOBR_RS08835 0.41 +2.6 1,848,922 + AZOBR_RS08835 0.41 +1.1 1,848,922 + AZOBR_RS08835 0.41 -0.6 1,848,922 + AZOBR_RS08835 0.41 +0.9 1,848,922 + AZOBR_RS08835 0.41 +0.7 1,848,922 + AZOBR_RS08835 0.41 +1.7 1,848,922 + AZOBR_RS08835 0.41 +1.8 1,848,923 - AZOBR_RS08835 0.41 -0.4 1,848,923 - AZOBR_RS08835 0.41 +0.9 1,848,923 - AZOBR_RS08835 0.41 +1.1 1,848,923 - AZOBR_RS08835 0.41 +1.1 1,849,045 + AZOBR_RS08835 0.54 +1.1 1,849,046 - AZOBR_RS08835 0.54 +0.7 1,849,136 - AZOBR_RS08835 0.64 +1.4 1,849,216 + AZOBR_RS08835 0.73 +2.3 1,849,216 + AZOBR_RS08835 0.73 +1.0 1,849,216 + AZOBR_RS08835 0.73 +3.1 1,849,216 + AZOBR_RS08835 0.73 +1.2 1,849,216 + AZOBR_RS08835 0.73 +0.8 1,849,217 - AZOBR_RS08835 0.73 +1.1 1,849,243 + AZOBR_RS08835 0.75 +3.8 1,849,553 + -2.0 1,849,553 + -1.6 1,849,554 - +3.0 1,849,605 + AZOBR_RS08840 0.12 +1.5 1,849,605 + AZOBR_RS08840 0.12 -3.1 1,849,605 + AZOBR_RS08840 0.12 +3.0 1,849,626 + AZOBR_RS08840 0.14 -0.2 1,849,627 - AZOBR_RS08840 0.14 +1.3 1,849,779 + AZOBR_RS08840 0.27 +2.0 1,849,780 - AZOBR_RS08840 0.27 +1.7 1,849,905 + AZOBR_RS08840 0.38 +3.0 1,849,905 + AZOBR_RS08840 0.38 +1.6 1,849,905 + AZOBR_RS08840 0.38 -2.7 1,849,905 + AZOBR_RS08840 0.38 +0.0 1,849,905 + AZOBR_RS08840 0.38 +2.6 1,849,905 + AZOBR_RS08840 0.38 +0.7 1,849,906 - AZOBR_RS08840 0.38 +2.3 1,849,906 - AZOBR_RS08840 0.38 +3.0 1,849,906 - AZOBR_RS08840 0.38 +1.4 1,849,906 - AZOBR_RS08840 0.38 -0.2 1,850,319 + AZOBR_RS08840 0.73 +1.7 1,850,319 + AZOBR_RS08840 0.73 +1.9 1,850,319 + AZOBR_RS08840 0.73 +0.7 1,850,320 - AZOBR_RS08840 0.73 -0.1
Or see this region's nucleotide sequence