Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06535

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06525 and AZOBR_RS06530 are separated by 121 nucleotidesAZOBR_RS06530 and AZOBR_RS06535 are separated by 257 nucleotidesAZOBR_RS06535 and AZOBR_RS06540 are separated by 84 nucleotides AZOBR_RS06525: AZOBR_RS06525 - membrane protein, at 1,381,816 to 1,382,763 _RS06525 AZOBR_RS06530: AZOBR_RS06530 - hypothetical protein, at 1,382,885 to 1,383,073 _RS06530 AZOBR_RS06535: AZOBR_RS06535 - serine protease, at 1,383,331 to 1,384,860 _RS06535 AZOBR_RS06540: AZOBR_RS06540 - phosphoserine phosphatase, at 1,384,945 to 1,385,856 _RS06540 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -3 -2 -1 0 1at 1382.762 kb on - strandat 1382.939 kb on + strand, within AZOBR_RS06530at 1383.137 kb on + strandat 1383.137 kb on + strandat 1383.137 kb on + strandat 1383.138 kb on - strandat 1383.138 kb on - strandat 1383.139 kb on + strandat 1383.139 kb on + strandat 1383.206 kb on + strandat 1383.206 kb on + strandat 1383.704 kb on - strand, within AZOBR_RS06535at 1383.704 kb on - strand, within AZOBR_RS06535at 1384.175 kb on - strand, within AZOBR_RS06535

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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1,382,762 - -3.2
1,382,939 + AZOBR_RS06530 0.29 +0.1
1,383,137 + -1.4
1,383,137 + -1.9
1,383,137 + -1.8
1,383,138 - -0.4
1,383,138 - -1.1
1,383,139 + -1.5
1,383,139 + -1.0
1,383,206 + -1.2
1,383,206 + -0.0
1,383,704 - AZOBR_RS06535 0.24 -1.4
1,383,704 - AZOBR_RS06535 0.24 -2.8
1,384,175 - AZOBR_RS06535 0.55 -2.3

Or see this region's nucleotide sequence