Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05965 and AZOBR_RS05970 overlap by 4 nucleotides AZOBR_RS05970 and AZOBR_RS05975 are separated by 67 nucleotides AZOBR_RS05975 and AZOBR_RS05980 are separated by 107 nucleotides
AZOBR_RS05965: AZOBR_RS05965 - hypothetical protein, at 1,266,205 to 1,266,576
_RS05965
AZOBR_RS05970: AZOBR_RS05970 - 4-carboxymuconolactone decarboxylase, at 1,266,573 to 1,267,040
_RS05970
AZOBR_RS05975: AZOBR_RS05975 - oxidoreductase, at 1,267,108 to 1,267,839
_RS05975
AZOBR_RS05980: AZOBR_RS05980 - LysR family transcriptional regulator, at 1,267,947 to 1,268,867
_RS05980
Position (kb) 1267
1268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1266.332 kb on + strand, within AZOBR_RS05965 at 1266.332 kb on + strand, within AZOBR_RS05965 at 1266.332 kb on + strand, within AZOBR_RS05965 at 1266.333 kb on - strand, within AZOBR_RS05965 at 1266.365 kb on + strand, within AZOBR_RS05965 at 1266.365 kb on + strand, within AZOBR_RS05965 at 1266.429 kb on - strand, within AZOBR_RS05965 at 1266.429 kb on - strand, within AZOBR_RS05965 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.676 kb on + strand, within AZOBR_RS05970 at 1266.677 kb on - strand, within AZOBR_RS05970 at 1266.677 kb on - strand, within AZOBR_RS05970 at 1266.677 kb on - strand, within AZOBR_RS05970 at 1266.841 kb on + strand, within AZOBR_RS05970 at 1266.841 kb on + strand, within AZOBR_RS05970 at 1266.842 kb on - strand, within AZOBR_RS05970 at 1267.224 kb on - strand, within AZOBR_RS05975 at 1267.361 kb on + strand, within AZOBR_RS05975 at 1267.362 kb on - strand, within AZOBR_RS05975 at 1267.376 kb on + strand, within AZOBR_RS05975 at 1267.376 kb on + strand, within AZOBR_RS05975 at 1267.376 kb on + strand, within AZOBR_RS05975 at 1267.481 kb on + strand, within AZOBR_RS05975 at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.883 kb on + strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1267.884 kb on - strand at 1268.301 kb on + strand, within AZOBR_RS05980 at 1268.464 kb on - strand, within AZOBR_RS05980 at 1268.464 kb on - strand, within AZOBR_RS05980 at 1268.464 kb on - strand, within AZOBR_RS05980 at 1268.766 kb on + strand, within AZOBR_RS05980 at 1268.766 kb on + strand, within AZOBR_RS05980 at 1268.767 kb on - strand, within AZOBR_RS05980 at 1268.767 kb on - strand, within AZOBR_RS05980 at 1268.769 kb on + strand, within AZOBR_RS05980
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 1,266,332 + AZOBR_RS05965 0.34 +0.5 1,266,332 + AZOBR_RS05965 0.34 +1.2 1,266,332 + AZOBR_RS05965 0.34 -0.6 1,266,333 - AZOBR_RS05965 0.34 -0.1 1,266,365 + AZOBR_RS05965 0.43 +1.1 1,266,365 + AZOBR_RS05965 0.43 +0.3 1,266,429 - AZOBR_RS05965 0.60 -2.0 1,266,429 - AZOBR_RS05965 0.60 +0.5 1,266,676 + AZOBR_RS05970 0.22 -2.2 1,266,676 + AZOBR_RS05970 0.22 +1.6 1,266,676 + AZOBR_RS05970 0.22 -0.5 1,266,676 + AZOBR_RS05970 0.22 +0.5 1,266,676 + AZOBR_RS05970 0.22 +0.6 1,266,676 + AZOBR_RS05970 0.22 -2.7 1,266,677 - AZOBR_RS05970 0.22 -0.7 1,266,677 - AZOBR_RS05970 0.22 +0.3 1,266,677 - AZOBR_RS05970 0.22 +0.0 1,266,841 + AZOBR_RS05970 0.57 -1.1 1,266,841 + AZOBR_RS05970 0.57 +0.4 1,266,842 - AZOBR_RS05970 0.57 -1.1 1,267,224 - AZOBR_RS05975 0.16 +1.9 1,267,361 + AZOBR_RS05975 0.35 -0.2 1,267,362 - AZOBR_RS05975 0.35 +1.8 1,267,376 + AZOBR_RS05975 0.37 +3.6 1,267,376 + AZOBR_RS05975 0.37 -0.6 1,267,376 + AZOBR_RS05975 0.37 +2.1 1,267,481 + AZOBR_RS05975 0.51 +0.5 1,267,883 + +0.7 1,267,883 + +0.1 1,267,883 + +0.1 1,267,883 + +0.1 1,267,883 + +0.0 1,267,883 + -3.0 1,267,883 + -3.3 1,267,883 + -1.5 1,267,884 - -0.4 1,267,884 - -0.3 1,267,884 - -0.6 1,267,884 - -0.0 1,267,884 - +1.5 1,267,884 - -0.5 1,267,884 - -2.6 1,267,884 - +0.1 1,268,301 + AZOBR_RS05980 0.38 +0.1 1,268,464 - AZOBR_RS05980 0.56 +0.2 1,268,464 - AZOBR_RS05980 0.56 +0.7 1,268,464 - AZOBR_RS05980 0.56 -0.1 1,268,766 + AZOBR_RS05980 0.89 -0.1 1,268,766 + AZOBR_RS05980 0.89 -0.0 1,268,767 - AZOBR_RS05980 0.89 -0.1 1,268,767 - AZOBR_RS05980 0.89 -3.5 1,268,769 + AZOBR_RS05980 0.89 +1.8
Or see this region's nucleotide sequence