Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05545

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05535 and AZOBR_RS05540 are separated by 4 nucleotidesAZOBR_RS05540 and AZOBR_RS05545 are separated by 158 nucleotidesAZOBR_RS05545 and AZOBR_RS05550 are separated by 14 nucleotides AZOBR_RS05535: AZOBR_RS05535 - hypothetical protein, at 1,175,539 to 1,176,003 _RS05535 AZOBR_RS05540: AZOBR_RS05540 - nitrogen fixation protein NifX, at 1,176,008 to 1,176,409 _RS05540 AZOBR_RS05545: AZOBR_RS05545 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 1,176,568 to 1,177,848 _RS05545 AZOBR_RS05550: AZOBR_RS05550 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 1,177,863 to 1,179,278 _RS05550 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1175.786 kb on + strand, within AZOBR_RS05535at 1175.786 kb on + strand, within AZOBR_RS05535at 1175.786 kb on + strand, within AZOBR_RS05535at 1175.787 kb on - strand, within AZOBR_RS05535at 1175.787 kb on - strand, within AZOBR_RS05535at 1175.787 kb on - strand, within AZOBR_RS05535at 1175.915 kb on + strand, within AZOBR_RS05535at 1175.916 kb on - strand, within AZOBR_RS05535at 1176.207 kb on + strand, within AZOBR_RS05540at 1176.333 kb on + strand, within AZOBR_RS05540at 1176.334 kb on - strand, within AZOBR_RS05540at 1177.506 kb on - strand, within AZOBR_RS05545at 1177.996 kb on + strandat 1177.997 kb on - strandat 1178.122 kb on + strand, within AZOBR_RS05550at 1178.122 kb on + strand, within AZOBR_RS05550at 1178.123 kb on - strand, within AZOBR_RS05550at 1178.123 kb on - strand, within AZOBR_RS05550at 1178.123 kb on - strand, within AZOBR_RS05550at 1178.123 kb on - strand, within AZOBR_RS05550at 1178.123 kb on - strand, within AZOBR_RS05550at 1178.326 kb on + strand, within AZOBR_RS05550at 1178.326 kb on + strand, within AZOBR_RS05550at 1178.327 kb on - strand, within AZOBR_RS05550at 1178.327 kb on - strand, within AZOBR_RS05550at 1178.467 kb on + strand, within AZOBR_RS05550at 1178.467 kb on + strand, within AZOBR_RS05550at 1178.468 kb on - strand, within AZOBR_RS05550at 1178.590 kb on + strand, within AZOBR_RS05550at 1178.590 kb on + strand, within AZOBR_RS05550at 1178.591 kb on - strand, within AZOBR_RS05550at 1178.681 kb on - strand, within AZOBR_RS05550

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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1,175,786 + AZOBR_RS05535 0.53 +0.3
1,175,786 + AZOBR_RS05535 0.53 +0.0
1,175,786 + AZOBR_RS05535 0.53 +0.1
1,175,787 - AZOBR_RS05535 0.53 -3.2
1,175,787 - AZOBR_RS05535 0.53 -1.3
1,175,787 - AZOBR_RS05535 0.53 -0.0
1,175,915 + AZOBR_RS05535 0.81 +0.0
1,175,916 - AZOBR_RS05535 0.81 -1.1
1,176,207 + AZOBR_RS05540 0.50 +2.8
1,176,333 + AZOBR_RS05540 0.81 -2.3
1,176,334 - AZOBR_RS05540 0.81 +0.4
1,177,506 - AZOBR_RS05545 0.73 +0.7
1,177,996 + -1.2
1,177,997 - -1.9
1,178,122 + AZOBR_RS05550 0.18 +0.5
1,178,122 + AZOBR_RS05550 0.18 -1.3
1,178,123 - AZOBR_RS05550 0.18 +1.2
1,178,123 - AZOBR_RS05550 0.18 -2.8
1,178,123 - AZOBR_RS05550 0.18 -0.5
1,178,123 - AZOBR_RS05550 0.18 +1.0
1,178,123 - AZOBR_RS05550 0.18 -1.3
1,178,326 + AZOBR_RS05550 0.33 +0.8
1,178,326 + AZOBR_RS05550 0.33 -0.3
1,178,327 - AZOBR_RS05550 0.33 +0.4
1,178,327 - AZOBR_RS05550 0.33 +0.3
1,178,467 + AZOBR_RS05550 0.43 -0.3
1,178,467 + AZOBR_RS05550 0.43 +0.3
1,178,468 - AZOBR_RS05550 0.43 +0.8
1,178,590 + AZOBR_RS05550 0.51 +0.7
1,178,590 + AZOBR_RS05550 0.51 +0.8
1,178,591 - AZOBR_RS05550 0.51 -1.2
1,178,681 - AZOBR_RS05550 0.58 -2.4

Or see this region's nucleotide sequence