Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04810 and AZOBR_RS04815 are separated by 181 nucleotides AZOBR_RS04815 and AZOBR_RS04820 are separated by 176 nucleotides
AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448
_RS04810
AZOBR_RS04815: AZOBR_RS04815 - radical SAM protein, at 1,012,630 to 1,013,547
_RS04815
AZOBR_RS04820: AZOBR_RS04820 - oxidoreductase, at 1,013,724 to 1,014,485
_RS04820
Position (kb)
1012
1013
1014 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1012.508 kb on + strand at 1012.508 kb on + strand at 1012.508 kb on + strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.186 kb on - strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.189 kb on - strand, within AZOBR_RS04815 at 1013.413 kb on + strand, within AZOBR_RS04815 at 1013.423 kb on + strand, within AZOBR_RS04815 at 1013.595 kb on + strand at 1013.628 kb on + strand at 1013.628 kb on + strand at 1013.628 kb on + strand at 1013.668 kb on + strand at 1013.669 kb on - strand at 1013.669 kb on - strand at 1013.683 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.790 kb on + strand at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.899 kb on + strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1013.900 kb on - strand, within AZOBR_RS04820 at 1014.001 kb on + strand, within AZOBR_RS04820 at 1014.010 kb on + strand, within AZOBR_RS04820 at 1014.010 kb on + strand, within AZOBR_RS04820 at 1014.011 kb on - strand, within AZOBR_RS04820 at 1014.011 kb on - strand, within AZOBR_RS04820 at 1014.392 kb on - strand, within AZOBR_RS04820
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 1,012,508 + +3.0 1,012,508 + +2.4 1,012,508 + +2.5 1,013,186 - AZOBR_RS04815 0.61 +0.4 1,013,186 - +1.2 1,013,186 - AZOBR_RS04815 0.61 +1.4 1,013,188 + AZOBR_RS04815 0.61 +0.0 1,013,188 + AZOBR_RS04815 0.61 -0.0 1,013,188 + AZOBR_RS04815 0.61 +0.5 1,013,189 - AZOBR_RS04815 0.61 -0.4 1,013,413 + AZOBR_RS04815 0.85 +0.1 1,013,423 + AZOBR_RS04815 0.86 -0.0 1,013,595 + +0.1 1,013,628 + -2.6 1,013,628 + +0.9 1,013,628 + +0.8 1,013,668 + +2.2 1,013,669 - -0.5 1,013,669 - -0.1 1,013,683 + +1.2 1,013,790 + -3.6 1,013,790 + +0.1 1,013,790 + -0.2 1,013,790 + +2.3 1,013,790 + +0.3 1,013,899 + AZOBR_RS04820 0.23 -1.1 1,013,899 + AZOBR_RS04820 0.23 -1.4 1,013,899 + AZOBR_RS04820 0.23 -1.6 1,013,899 + AZOBR_RS04820 0.23 -0.5 1,013,899 + AZOBR_RS04820 0.23 -3.9 1,013,899 + AZOBR_RS04820 0.23 -0.6 1,013,900 - AZOBR_RS04820 0.23 -0.9 1,013,900 - AZOBR_RS04820 0.23 -1.8 1,013,900 - AZOBR_RS04820 0.23 -3.7 1,013,900 - AZOBR_RS04820 0.23 +0.6 1,013,900 - AZOBR_RS04820 0.23 +1.9 1,014,001 + AZOBR_RS04820 0.36 +0.1 1,014,010 + AZOBR_RS04820 0.38 +0.6 1,014,010 + AZOBR_RS04820 0.38 -2.9 1,014,011 - AZOBR_RS04820 0.38 -1.1 1,014,011 - AZOBR_RS04820 0.38 +1.2 1,014,392 - AZOBR_RS04820 0.88 -0.9
Or see this region's nucleotide sequence