Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04080 and AZOBR_RS04085 are separated by 108 nucleotides AZOBR_RS04085 and AZOBR_RS04090 are separated by 21 nucleotides AZOBR_RS04090 and AZOBR_RS04095 are separated by 11 nucleotides
AZOBR_RS04080: AZOBR_RS04080 - cytochrome C, at 858,892 to 859,758
_RS04080
AZOBR_RS04085: AZOBR_RS04085 - membrane protein, at 859,867 to 860,610
_RS04085
AZOBR_RS04090: AZOBR_RS04090 - haloacid dehalogenase, at 860,632 to 861,300
_RS04090
AZOBR_RS04095: AZOBR_RS04095 - glutamate 5-kinase, at 861,312 to 862,442
_RS04095
Position (kb) 860
861
862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.685 kb on - strand at 859.685 kb on - strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.688 kb on - strand at 859.688 kb on - strand at 859.738 kb on - strand at 859.808 kb on + strand at 859.829 kb on - strand at 859.829 kb on - strand at 860.038 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.231 kb on - strand, within AZOBR_RS04085 at 860.297 kb on - strand, within AZOBR_RS04085 at 860.456 kb on - strand, within AZOBR_RS04085 at 860.588 kb on - strand at 861.063 kb on - strand, within AZOBR_RS04090 at 861.134 kb on + strand, within AZOBR_RS04090 at 861.135 kb on - strand, within AZOBR_RS04090 at 861.170 kb on + strand, within AZOBR_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 859,640 + AZOBR_RS04080 0.86 -0.6 859,640 + AZOBR_RS04080 0.86 +1.2 859,685 - +0.8 859,685 - +0.1 859,687 + +0.4 859,687 + +0.7 859,687 + +0.3 859,688 - +0.6 859,688 - -0.8 859,738 - -0.8 859,808 + -0.5 859,829 - +1.5 859,829 - +0.4 860,038 + AZOBR_RS04085 0.23 +1.2 860,230 + AZOBR_RS04085 0.49 -3.5 860,230 + AZOBR_RS04085 0.49 +0.5 860,230 + AZOBR_RS04085 0.49 -0.1 860,231 - AZOBR_RS04085 0.49 +0.4 860,297 - AZOBR_RS04085 0.58 +2.2 860,456 - AZOBR_RS04085 0.79 +0.4 860,588 - +0.4 861,063 - AZOBR_RS04090 0.64 -4.7 861,134 + AZOBR_RS04090 0.75 +1.6 861,135 - AZOBR_RS04090 0.75 +1.5 861,170 + AZOBR_RS04090 0.80 -3.2
Or see this region's nucleotide sequence