Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03065 and AZOBR_RS03070 are separated by 89 nucleotides AZOBR_RS03070 and AZOBR_RS03075 are separated by 169 nucleotides AZOBR_RS03075 and AZOBR_RS03080 are separated by 141 nucleotides AZOBR_RS03080 and AZOBR_RS03085 are separated by 272 nucleotides
AZOBR_RS03065: AZOBR_RS03065 - pirin, at 655,250 to 656,152
_RS03065
AZOBR_RS03070: AZOBR_RS03070 - hypothetical protein, at 656,242 to 656,520
_RS03070
AZOBR_RS03075: AZOBR_RS03075 - tRNA-Ala, at 656,690 to 656,765
_RS03075
AZOBR_RS03080: AZOBR_RS03080 - hypothetical protein, at 656,907 to 657,305
_RS03080
AZOBR_RS03085: AZOBR_RS03085 - gamma-glutamyltransferase, at 657,578 to 659,302
_RS03085
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 655.920 kb on + strand, within AZOBR_RS03065 at 655.920 kb on + strand, within AZOBR_RS03065 at 656.725 kb on - strand, within AZOBR_RS03075 at 657.248 kb on - strand, within AZOBR_RS03080 at 657.248 kb on - strand at 657.248 kb on - strand, within AZOBR_RS03080 at 657.251 kb on - strand, within AZOBR_RS03080 at 657.487 kb on - strand at 657.495 kb on - strand at 657.703 kb on + strand at 657.860 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 658.178 kb on + strand, within AZOBR_RS03085 at 658.178 kb on + strand, within AZOBR_RS03085 at 658.286 kb on + strand, within AZOBR_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 655,920 + AZOBR_RS03065 0.74 -3.6 655,920 + AZOBR_RS03065 0.74 -2.8 656,725 - AZOBR_RS03075 0.46 +2.3 657,248 - AZOBR_RS03080 0.85 +0.5 657,248 - +3.9 657,248 - AZOBR_RS03080 0.85 +1.8 657,251 - AZOBR_RS03080 0.86 +1.8 657,487 - +1.1 657,495 - +1.2 657,703 + -1.5 657,860 + AZOBR_RS03085 0.16 -1.5 657,968 + AZOBR_RS03085 0.23 +1.1 657,968 + AZOBR_RS03085 0.23 -0.6 657,968 + AZOBR_RS03085 0.23 +0.4 658,178 + AZOBR_RS03085 0.35 +1.5 658,178 + AZOBR_RS03085 0.35 +0.7 658,286 + AZOBR_RS03085 0.41 -1.0
Or see this region's nucleotide sequence