Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02115 and AZOBR_RS02120 are separated by 58 nucleotides AZOBR_RS02120 and AZOBR_RS02125 are separated by 213 nucleotides AZOBR_RS02125 and AZOBR_RS02130 are separated by 366 nucleotides AZOBR_RS02130 and AZOBR_RS02135 are separated by 77 nucleotides
AZOBR_RS02115: AZOBR_RS02115 - hypothetical protein, at 435,792 to 436,103
_RS02115
AZOBR_RS02120: AZOBR_RS02120 - hypothetical protein, at 436,162 to 436,635
_RS02120
AZOBR_RS02125: AZOBR_RS02125 - DNA mismatch repair protein MutS, at 436,849 to 439,551
_RS02125
AZOBR_RS02130: AZOBR_RS02130 - hypothetical protein, at 439,918 to 440,115
_RS02130
AZOBR_RS02135: AZOBR_RS02135 - hypothetical protein, at 440,193 to 440,705
_RS02135
Position (kb) 436
437
438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 436.163 kb on + strand at 436.446 kb on - strand, within AZOBR_RS02120 at 436.763 kb on - strand at 436.763 kb on - strand at 436.799 kb on + strand at 436.800 kb on - strand at 436.960 kb on + strand at 436.978 kb on + strand at 437.104 kb on + strand at 437.105 kb on - strand at 437.452 kb on + strand, within AZOBR_RS02125 at 437.453 kb on - strand, within AZOBR_RS02125 at 437.453 kb on - strand, within AZOBR_RS02125 at 437.569 kb on + strand, within AZOBR_RS02125 at 437.570 kb on - strand, within AZOBR_RS02125 at 437.621 kb on - strand, within AZOBR_RS02125 at 438.200 kb on - strand, within AZOBR_RS02125 at 438.274 kb on + strand, within AZOBR_RS02125 at 438.274 kb on + strand, within AZOBR_RS02125 at 438.274 kb on + strand, within AZOBR_RS02125 at 438.275 kb on - strand, within AZOBR_RS02125 at 438.901 kb on + strand, within AZOBR_RS02125 at 438.901 kb on + strand, within AZOBR_RS02125 at 438.902 kb on - strand, within AZOBR_RS02125 at 439.126 kb on + strand, within AZOBR_RS02125 at 439.126 kb on + strand, within AZOBR_RS02125 at 439.127 kb on - strand, within AZOBR_RS02125 at 439.252 kb on + strand, within AZOBR_RS02125 at 439.252 kb on + strand, within AZOBR_RS02125 at 439.253 kb on - strand, within AZOBR_RS02125 at 439.525 kb on + strand at 439.560 kb on - strand at 439.663 kb on + strand at 439.664 kb on - strand at 439.664 kb on - strand at 439.677 kb on - strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.919 kb on + strand at 439.919 kb on + strand at 439.919 kb on + strand at 439.920 kb on - strand at 439.920 kb on - strand at 439.920 kb on - strand at 439.920 kb on - strand at 440.356 kb on + strand, within AZOBR_RS02135 at 440.356 kb on + strand, within AZOBR_RS02135 at 440.356 kb on + strand, within AZOBR_RS02135 at 440.356 kb on + strand, within AZOBR_RS02135 at 440.357 kb on - strand, within AZOBR_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 436,163 + +0.7 436,446 - AZOBR_RS02120 0.60 +0.8 436,763 - +0.5 436,763 - -0.2 436,799 + +0.4 436,800 - +0.7 436,960 + -0.6 436,978 + +0.2 437,104 + +0.8 437,105 - +0.8 437,452 + AZOBR_RS02125 0.22 -0.9 437,453 - AZOBR_RS02125 0.22 -0.5 437,453 - AZOBR_RS02125 0.22 +0.1 437,569 + AZOBR_RS02125 0.27 +0.5 437,570 - AZOBR_RS02125 0.27 -0.2 437,621 - AZOBR_RS02125 0.29 +0.2 438,200 - AZOBR_RS02125 0.50 -2.5 438,274 + AZOBR_RS02125 0.53 -3.2 438,274 + AZOBR_RS02125 0.53 +0.7 438,274 + AZOBR_RS02125 0.53 +2.2 438,275 - AZOBR_RS02125 0.53 -0.6 438,901 + AZOBR_RS02125 0.76 -0.6 438,901 + AZOBR_RS02125 0.76 +0.4 438,902 - AZOBR_RS02125 0.76 -0.4 439,126 + AZOBR_RS02125 0.84 +0.6 439,126 + AZOBR_RS02125 0.84 -0.4 439,127 - AZOBR_RS02125 0.84 +0.1 439,252 + AZOBR_RS02125 0.89 -0.4 439,252 + AZOBR_RS02125 0.89 +0.6 439,253 - AZOBR_RS02125 0.89 +0.2 439,525 + -0.1 439,560 - +0.4 439,663 + -0.2 439,664 - +0.6 439,664 - -1.5 439,677 - +0.8 439,875 + +0.0 439,875 + -1.3 439,875 + -1.0 439,875 + -1.1 439,876 - -0.3 439,876 - +0.7 439,876 - +0.4 439,876 - -0.2 439,919 + +0.7 439,919 + +0.4 439,919 + -4.2 439,920 - +1.7 439,920 - -0.1 439,920 - -0.0 439,920 - +2.3 440,356 + AZOBR_RS02135 0.32 +0.3 440,356 + AZOBR_RS02135 0.32 +0.3 440,356 + AZOBR_RS02135 0.32 -0.7 440,356 + AZOBR_RS02135 0.32 +0.5 440,357 - AZOBR_RS02135 0.32 -0.3
Or see this region's nucleotide sequence