Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02015 and AZOBR_RS02020 overlap by 4 nucleotides AZOBR_RS02020 and AZOBR_RS02025 are separated by 3 nucleotides AZOBR_RS02025 and AZOBR_RS02030 are separated by 234 nucleotides
AZOBR_RS02015: AZOBR_RS02015 - S-adenosylmethionine decarboxylase, at 412,813 to 413,322
_RS02015
AZOBR_RS02020: AZOBR_RS02020 - spermidine synthase, at 413,319 to 414,179
_RS02020
AZOBR_RS02025: AZOBR_RS02025 - transporter, at 414,183 to 415,673
_RS02025
AZOBR_RS02030: AZOBR_RS02030 - hypothetical protein, at 415,908 to 417,062
_RS02030
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 413.361 kb on - strand at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.004 kb on - strand, within AZOBR_RS02020 at 414.114 kb on + strand at 414.114 kb on + strand at 414.115 kb on - strand at 414.115 kb on - strand at 414.178 kb on - strand at 414.974 kb on - strand, within AZOBR_RS02025 at 415.021 kb on - strand, within AZOBR_RS02025 at 416.026 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.051 kb on - strand, within AZOBR_RS02030 at 416.182 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.629 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 413,361 - +0.8 413,847 + AZOBR_RS02020 0.61 -0.6 413,847 + AZOBR_RS02020 0.61 -2.1 413,847 + AZOBR_RS02020 0.61 +0.9 413,847 + AZOBR_RS02020 0.61 -0.9 413,847 + AZOBR_RS02020 0.61 -0.9 413,848 - AZOBR_RS02020 0.61 +0.5 413,848 - AZOBR_RS02020 0.61 -0.7 413,848 - AZOBR_RS02020 0.61 -0.1 414,000 + AZOBR_RS02020 0.79 -1.2 414,000 + AZOBR_RS02020 0.79 +0.0 414,001 - AZOBR_RS02020 0.79 +0.1 414,001 - AZOBR_RS02020 0.79 -0.4 414,001 - AZOBR_RS02020 0.79 +1.4 414,001 - AZOBR_RS02020 0.79 +1.5 414,004 - AZOBR_RS02020 0.80 -3.3 414,114 + -1.2 414,114 + -0.9 414,115 - -0.6 414,115 - -0.4 414,178 - -0.8 414,974 - AZOBR_RS02025 0.53 -0.1 415,021 - AZOBR_RS02025 0.56 -2.4 416,026 + AZOBR_RS02030 0.10 +1.1 416,050 + AZOBR_RS02030 0.12 +0.4 416,050 + AZOBR_RS02030 0.12 +0.7 416,051 - AZOBR_RS02030 0.12 +0.2 416,182 + AZOBR_RS02030 0.24 -2.0 416,425 + AZOBR_RS02030 0.45 -0.1 416,425 + AZOBR_RS02030 0.45 +0.5 416,426 - AZOBR_RS02030 0.45 -1.8 416,426 - AZOBR_RS02030 0.45 -0.9 416,629 + AZOBR_RS02030 0.62 +1.7 416,638 + AZOBR_RS02030 0.63 +0.0 416,638 + AZOBR_RS02030 0.63 +1.5 416,638 + AZOBR_RS02030 0.63 -1.6 416,639 - AZOBR_RS02030 0.63 +0.8 416,639 - AZOBR_RS02030 0.63 -0.1 416,639 - AZOBR_RS02030 0.63 +0.8 416,639 - AZOBR_RS02030 0.63 +1.2
Or see this region's nucleotide sequence