Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01845 and AZOBR_RS01850 are separated by 112 nucleotides AZOBR_RS01850 and AZOBR_RS01855 are separated by 343 nucleotides AZOBR_RS01855 and AZOBR_RS01860 are separated by 403 nucleotides
AZOBR_RS01845: AZOBR_RS01845 - leucyl-tRNA synthetase, at 374,996 to 377,566
_RS01845
AZOBR_RS01850: AZOBR_RS01850 - hypothetical protein, at 377,679 to 378,218
_RS01850
AZOBR_RS01855: AZOBR_RS01855 - major outer membrane protein OmaA, at 378,562 to 379,734
_RS01855
AZOBR_RS01860: AZOBR_RS01860 - hypothetical protein, at 380,138 to 381,295
_RS01860
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 377.602 kb on - strand at 377.610 kb on - strand at 377.858 kb on - strand, within AZOBR_RS01850 at 377.903 kb on - strand, within AZOBR_RS01850 at 378.290 kb on - strand at 379.855 kb on - strand at 380.121 kb on - strand at 380.258 kb on + strand, within AZOBR_RS01860 at 380.258 kb on + strand, within AZOBR_RS01860 at 380.259 kb on - strand, within AZOBR_RS01860 at 380.360 kb on + strand, within AZOBR_RS01860 at 380.583 kb on - strand, within AZOBR_RS01860 at 380.654 kb on + strand, within AZOBR_RS01860 at 380.655 kb on - strand at 380.655 kb on - strand, within AZOBR_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 377,602 - -1.6 377,610 - -1.0 377,858 - AZOBR_RS01850 0.33 +1.4 377,903 - AZOBR_RS01850 0.41 -3.7 378,290 - -3.5 379,855 - -1.4 380,121 - +0.4 380,258 + AZOBR_RS01860 0.10 +1.6 380,258 + AZOBR_RS01860 0.10 -0.3 380,259 - AZOBR_RS01860 0.10 -1.1 380,360 + AZOBR_RS01860 0.19 -1.3 380,583 - AZOBR_RS01860 0.38 +0.4 380,654 + AZOBR_RS01860 0.45 +1.0 380,655 - +0.4 380,655 - AZOBR_RS01860 0.45 -0.4
Or see this region's nucleotide sequence