Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01360 and AZOBR_RS01365 are separated by 0 nucleotides AZOBR_RS01365 and AZOBR_RS01370 are separated by 125 nucleotides AZOBR_RS01370 and AZOBR_RS01375 are separated by 11 nucleotides AZOBR_RS01375 and AZOBR_RS01380 are separated by 461 nucleotides
AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587
_RS01360
AZOBR_RS01365: AZOBR_RS01365 - membrane protein, at 283,588 to 284,142
_RS01365
AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161
_RS01370
AZOBR_RS01375: AZOBR_RS01375 - hypothetical protein, at 285,173 to 285,685
_RS01375
AZOBR_RS01380: AZOBR_RS01380 - hypothetical protein, at 286,147 to 286,452
_RS01380
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 283.342 kb on + strand, within AZOBR_RS01360 at 283.343 kb on - strand, within AZOBR_RS01360 at 283.462 kb on + strand, within AZOBR_RS01360 at 283.463 kb on - strand at 283.463 kb on - strand, within AZOBR_RS01360 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.812 kb on - strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.833 kb on - strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.076 kb on - strand, within AZOBR_RS01365 at 284.482 kb on - strand, within AZOBR_RS01370 at 284.601 kb on + strand, within AZOBR_RS01370 at 284.601 kb on + strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 285.160 kb on - strand at 285.160 kb on - strand at 285.394 kb on - strand, within AZOBR_RS01375 at 285.394 kb on - strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.642 kb on + strand at 285.643 kb on - strand at 285.717 kb on - strand at 285.754 kb on + strand at 285.755 kb on - strand at 285.755 kb on - strand at 285.836 kb on + strand at 286.083 kb on - strand at 286.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 283,342 + AZOBR_RS01360 0.76 -2.4 283,343 - AZOBR_RS01360 0.76 -1.8 283,462 + AZOBR_RS01360 0.88 -1.4 283,463 - +0.4 283,463 - AZOBR_RS01360 0.88 -2.4 283,763 + AZOBR_RS01365 0.32 +0.8 283,763 + AZOBR_RS01365 0.32 -1.9 283,812 - AZOBR_RS01365 0.40 -0.2 283,832 + AZOBR_RS01365 0.44 -0.2 283,832 + AZOBR_RS01365 0.44 -0.3 283,832 + AZOBR_RS01365 0.44 -0.5 283,833 - AZOBR_RS01365 0.44 +1.3 284,033 + AZOBR_RS01365 0.80 +1.1 284,033 + AZOBR_RS01365 0.80 -2.0 284,033 + AZOBR_RS01365 0.80 -1.9 284,033 + AZOBR_RS01365 0.80 -3.1 284,034 - AZOBR_RS01365 0.80 -3.1 284,034 - AZOBR_RS01365 0.80 +0.5 284,034 - AZOBR_RS01365 0.80 +0.0 284,076 - AZOBR_RS01365 0.88 -1.4 284,482 - AZOBR_RS01370 0.24 +0.5 284,601 + AZOBR_RS01370 0.37 -2.5 284,601 + AZOBR_RS01370 0.37 +0.2 284,683 - AZOBR_RS01370 0.46 +0.0 284,683 - AZOBR_RS01370 0.46 +0.1 284,683 - AZOBR_RS01370 0.46 +0.5 284,706 + AZOBR_RS01370 0.49 -0.6 284,706 + AZOBR_RS01370 0.49 -0.3 284,706 + AZOBR_RS01370 0.49 +1.2 284,707 - AZOBR_RS01370 0.49 -0.3 284,707 - AZOBR_RS01370 0.49 -1.9 284,707 - AZOBR_RS01370 0.49 -0.2 284,775 + AZOBR_RS01370 0.57 -1.7 284,775 + AZOBR_RS01370 0.57 -0.0 284,775 + AZOBR_RS01370 0.57 +1.4 284,775 + AZOBR_RS01370 0.57 -0.1 284,775 + AZOBR_RS01370 0.57 +0.5 284,775 + AZOBR_RS01370 0.57 +0.4 284,776 - AZOBR_RS01370 0.57 -0.9 284,776 - AZOBR_RS01370 0.57 -0.2 284,776 - AZOBR_RS01370 0.57 +0.9 284,776 - AZOBR_RS01370 0.57 -1.5 284,776 - AZOBR_RS01370 0.57 -0.2 285,160 - +0.6 285,160 - -0.3 285,394 - AZOBR_RS01375 0.43 -0.8 285,394 - AZOBR_RS01375 0.43 -0.6 285,550 + AZOBR_RS01375 0.73 +0.9 285,550 + AZOBR_RS01375 0.73 -0.7 285,642 + +0.1 285,643 - +1.4 285,717 - +0.8 285,754 + -1.7 285,755 - -2.2 285,755 - +0.6 285,836 + +0.6 286,083 - +0.4 286,083 - +0.5
Or see this region's nucleotide sequence