Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01355

Experiment: Paraquat dichloride 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01350 and AZOBR_RS01355 are separated by 229 nucleotidesAZOBR_RS01355 and AZOBR_RS01360 are separated by 65 nucleotides AZOBR_RS01350: AZOBR_RS01350 - 2-nitropropane dioxygenase, at 280,111 to 281,508 _RS01350 AZOBR_RS01355: AZOBR_RS01355 - glycerophosphoryl diester phosphodiesterase, at 281,738 to 282,487 _RS01355 AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587 _RS01360 Position (kb) 281 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1at 281.854 kb on - strand, within AZOBR_RS01355at 281.854 kb on - strand, within AZOBR_RS01355at 281.992 kb on - strand, within AZOBR_RS01355at 281.992 kb on - strand, within AZOBR_RS01355at 282.502 kb on + strandat 282.519 kb on + strandat 282.519 kb on + strandat 282.523 kb on - strandat 282.644 kb on - strandat 282.664 kb on + strand, within AZOBR_RS01360at 282.709 kb on + strand, within AZOBR_RS01360at 282.718 kb on + strand, within AZOBR_RS01360at 282.743 kb on - strand, within AZOBR_RS01360at 282.946 kb on + strand, within AZOBR_RS01360at 282.947 kb on - strand, within AZOBR_RS01360at 283.342 kb on + strand, within AZOBR_RS01360at 283.343 kb on - strand, within AZOBR_RS01360at 283.462 kb on + strand, within AZOBR_RS01360at 283.463 kb on - strandat 283.463 kb on - strand, within AZOBR_RS01360

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml
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281,854 - AZOBR_RS01355 0.15 -0.4
281,854 - AZOBR_RS01355 0.15 -0.0
281,992 - AZOBR_RS01355 0.34 -1.1
281,992 - AZOBR_RS01355 0.34 -2.0
282,502 + -0.0
282,519 + +0.2
282,519 + +0.3
282,523 - -3.5
282,644 - -0.6
282,664 + AZOBR_RS01360 0.11 -1.4
282,709 + AZOBR_RS01360 0.15 -1.3
282,718 + AZOBR_RS01360 0.16 -0.9
282,743 - AZOBR_RS01360 0.18 -1.1
282,946 + AZOBR_RS01360 0.38 -0.1
282,947 - AZOBR_RS01360 0.38 -0.9
283,342 + AZOBR_RS01360 0.76 -2.4
283,343 - AZOBR_RS01360 0.76 -1.8
283,462 + AZOBR_RS01360 0.88 -1.4
283,463 - +0.4
283,463 - AZOBR_RS01360 0.88 -2.4

Or see this region's nucleotide sequence