Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01315 and AZOBR_RS01320 are separated by 58 nucleotides AZOBR_RS01320 and AZOBR_RS01325 are separated by 22 nucleotides AZOBR_RS01325 and AZOBR_RS01330 are separated by 230 nucleotides AZOBR_RS01330 and AZOBR_RS01335 are separated by 84 nucleotides
AZOBR_RS01315: AZOBR_RS01315 - GCN5 family N-acetyltransferase, at 273,136 to 275,820
_RS01315
AZOBR_RS01320: AZOBR_RS01320 - hypothetical protein, at 275,879 to 276,451
_RS01320
AZOBR_RS01325: AZOBR_RS01325 - 2-hydroxyacid dehydrogenase, at 276,474 to 277,463
_RS01325
AZOBR_RS01330: AZOBR_RS01330 - hypothetical protein, at 277,694 to 278,248
_RS01330
AZOBR_RS01335: AZOBR_RS01335 - hypothetical protein, at 278,333 to 278,926
_RS01335
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.533 kb on + strand, within AZOBR_RS01315 at 275.533 kb on + strand, within AZOBR_RS01315 at 275.533 kb on + strand, within AZOBR_RS01315 at 275.534 kb on - strand, within AZOBR_RS01315 at 275.534 kb on - strand at 275.582 kb on - strand at 275.626 kb on + strand at 275.683 kb on + strand at 275.874 kb on + strand at 275.874 kb on + strand at 275.874 kb on + strand at 275.875 kb on - strand at 275.875 kb on - strand at 275.875 kb on - strand at 276.116 kb on + strand, within AZOBR_RS01320 at 276.116 kb on + strand, within AZOBR_RS01320 at 276.116 kb on + strand, within AZOBR_RS01320 at 276.116 kb on + strand, within AZOBR_RS01320 at 276.434 kb on + strand at 276.434 kb on + strand at 276.435 kb on - strand at 276.450 kb on - strand at 276.475 kb on + strand at 276.476 kb on - strand at 276.476 kb on - strand at 276.799 kb on + strand, within AZOBR_RS01325 at 276.799 kb on + strand, within AZOBR_RS01325 at 276.874 kb on + strand, within AZOBR_RS01325 at 276.874 kb on + strand, within AZOBR_RS01325 at 276.928 kb on + strand, within AZOBR_RS01325 at 277.463 kb on + strand at 277.463 kb on + strand at 277.643 kb on + strand at 277.643 kb on + strand at 277.645 kb on + strand at 277.645 kb on + strand at 278.225 kb on + strand at 278.225 kb on + strand at 278.395 kb on - strand, within AZOBR_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 275,533 + AZOBR_RS01315 0.89 +0.2 275,533 + AZOBR_RS01315 0.89 -0.4 275,533 + AZOBR_RS01315 0.89 +0.3 275,534 - AZOBR_RS01315 0.89 -0.5 275,534 - +0.5 275,582 - +1.0 275,626 + -0.4 275,683 + -2.8 275,874 + +0.9 275,874 + +0.1 275,874 + -0.1 275,875 - -1.3 275,875 - -1.8 275,875 - +0.5 276,116 + AZOBR_RS01320 0.41 -0.5 276,116 + AZOBR_RS01320 0.41 -2.0 276,116 + AZOBR_RS01320 0.41 -2.5 276,116 + AZOBR_RS01320 0.41 +0.2 276,434 + +0.6 276,434 + -0.5 276,435 - -0.3 276,450 - +0.8 276,475 + -1.2 276,476 - -1.9 276,476 - +1.2 276,799 + AZOBR_RS01325 0.33 -0.4 276,799 + AZOBR_RS01325 0.33 -2.4 276,874 + AZOBR_RS01325 0.40 +2.4 276,874 + AZOBR_RS01325 0.40 +0.9 276,928 + AZOBR_RS01325 0.46 -1.0 277,463 + -1.8 277,463 + -0.1 277,643 + +0.6 277,643 + -0.0 277,645 + -0.4 277,645 + -1.0 278,225 + +0.4 278,225 + +1.5 278,395 - AZOBR_RS01335 0.10 -2.4
Or see this region's nucleotide sequence