Experiment: Paraquat dichloride 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00605 and AZOBR_RS00610 are separated by 116 nucleotides AZOBR_RS00610 and AZOBR_RS00615 are separated by 10 nucleotides AZOBR_RS00615 and AZOBR_RS00620 are separated by 132 nucleotides
AZOBR_RS00605: AZOBR_RS00605 - transcriptional Regulator LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator), at 124,595 to 125,491
_RS00605
AZOBR_RS00610: AZOBR_RS00610 - hypothetical protein, at 125,608 to 125,805
_RS00610
AZOBR_RS00615: AZOBR_RS00615 - phosphotyrosine protein phosphatase, at 125,816 to 126,289
_RS00615
AZOBR_RS00620: AZOBR_RS00620 - NAD-dependent deacetylase, at 126,422 to 127,135
_RS00620
Position (kb) 125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 124.800 kb on - strand, within AZOBR_RS00605 at 124.800 kb on - strand, within AZOBR_RS00605 at 124.800 kb on - strand, within AZOBR_RS00605 at 125.400 kb on - strand, within AZOBR_RS00605 at 125.907 kb on + strand, within AZOBR_RS00615 at 125.908 kb on - strand, within AZOBR_RS00615 at 125.910 kb on + strand, within AZOBR_RS00615 at 125.950 kb on - strand at 125.950 kb on - strand, within AZOBR_RS00615 at 126.037 kb on + strand, within AZOBR_RS00615 at 126.038 kb on - strand, within AZOBR_RS00615 at 126.038 kb on - strand, within AZOBR_RS00615 at 126.039 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.157 kb on - strand, within AZOBR_RS00615 at 126.157 kb on - strand at 126.327 kb on + strand at 126.328 kb on - strand at 126.328 kb on - strand at 126.328 kb on - strand at 126.373 kb on + strand at 126.373 kb on + strand at 126.388 kb on + strand at 126.388 kb on + strand at 126.388 kb on + strand at 126.389 kb on - strand at 126.588 kb on - strand at 126.588 kb on - strand, within AZOBR_RS00620
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.04 mg/ml remove 124,800 - AZOBR_RS00605 0.23 -2.3 124,800 - AZOBR_RS00605 0.23 +0.5 124,800 - AZOBR_RS00605 0.23 -3.3 125,400 - AZOBR_RS00605 0.90 +0.6 125,907 + AZOBR_RS00615 0.19 -1.4 125,908 - AZOBR_RS00615 0.19 -0.6 125,910 + AZOBR_RS00615 0.20 +2.1 125,950 - +1.4 125,950 - AZOBR_RS00615 0.28 +0.8 126,037 + AZOBR_RS00615 0.47 -0.4 126,038 - AZOBR_RS00615 0.47 +2.4 126,038 - AZOBR_RS00615 0.47 -0.2 126,039 + AZOBR_RS00615 0.47 -1.1 126,156 + AZOBR_RS00615 0.72 -0.7 126,156 + AZOBR_RS00615 0.72 -2.2 126,156 + AZOBR_RS00615 0.72 -0.2 126,156 + AZOBR_RS00615 0.72 +1.1 126,156 + AZOBR_RS00615 0.72 +1.3 126,156 + AZOBR_RS00615 0.72 +1.0 126,156 + AZOBR_RS00615 0.72 +0.1 126,156 + AZOBR_RS00615 0.72 -1.3 126,157 - AZOBR_RS00615 0.72 +0.2 126,157 - +1.4 126,327 + -1.5 126,328 - +1.2 126,328 - -3.3 126,328 - -0.3 126,373 + -2.3 126,373 + -1.4 126,388 + +0.7 126,388 + +0.8 126,388 + +0.7 126,389 - -1.0 126,588 - -0.2 126,588 - AZOBR_RS00620 0.23 +0.5
Or see this region's nucleotide sequence