Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29635

Experiment: Chlorite 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29625 and AO356_29630 are separated by 12 nucleotidesAO356_29630 and AO356_29635 are separated by 146 nucleotidesAO356_29635 and AO356_29640 are separated by 186 nucleotides AO356_29625: AO356_29625 - hypothetical protein, at 6,893,884 to 6,894,792 _29625 AO356_29630: AO356_29630 - hypothetical protein, at 6,894,805 to 6,894,993 _29630 AO356_29635: AO356_29635 - transcriptional regulator, at 6,895,140 to 6,895,937 _29635 AO356_29640: AO356_29640 - FAD-dependent oxidoreductase, at 6,896,124 to 6,897,413 _29640 Position (kb) 6895 6896Strain fitness (log2 ratio) -2 -1 0 1at 6894.215 kb on + strand, within AO356_29625at 6894.234 kb on + strand, within AO356_29625at 6894.234 kb on + strand, within AO356_29625at 6894.235 kb on - strand, within AO356_29625at 6894.253 kb on + strand, within AO356_29625at 6894.254 kb on - strand, within AO356_29625at 6894.312 kb on - strand, within AO356_29625at 6894.368 kb on - strand, within AO356_29625at 6894.704 kb on + strandat 6894.705 kb on - strandat 6894.917 kb on + strand, within AO356_29630at 6894.918 kb on - strand, within AO356_29630at 6894.941 kb on + strand, within AO356_29630at 6894.942 kb on - strand, within AO356_29630at 6894.962 kb on + strand, within AO356_29630at 6894.963 kb on - strand, within AO356_29630at 6894.963 kb on - strand, within AO356_29630at 6894.963 kb on - strand, within AO356_29630at 6894.963 kb on - strand, within AO356_29630at 6894.963 kb on - strand, within AO356_29630at 6895.062 kb on + strandat 6895.063 kb on - strandat 6895.063 kb on - strandat 6895.092 kb on + strandat 6895.412 kb on - strand, within AO356_29635at 6895.454 kb on + strand, within AO356_29635at 6895.454 kb on + strand, within AO356_29635at 6895.596 kb on + strand, within AO356_29635at 6895.596 kb on + strand, within AO356_29635at 6895.597 kb on - strand, within AO356_29635at 6895.597 kb on - strand, within AO356_29635at 6895.749 kb on - strand, within AO356_29635at 6895.749 kb on - strand, within AO356_29635at 6895.749 kb on - strand, within AO356_29635at 6895.909 kb on - strandat 6895.909 kb on - strandat 6895.963 kb on - strandat 6896.066 kb on - strandat 6896.150 kb on - strandat 6896.152 kb on + strandat 6896.152 kb on + strandat 6896.536 kb on + strand, within AO356_29640at 6896.537 kb on - strand, within AO356_29640at 6896.701 kb on - strand, within AO356_29640at 6896.893 kb on + strand, within AO356_29640at 6896.909 kb on + strand, within AO356_29640

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.04 mM
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6,894,215 + AO356_29625 0.36 +0.5
6,894,234 + AO356_29625 0.39 -0.6
6,894,234 + AO356_29625 0.39 +1.4
6,894,235 - AO356_29625 0.39 +0.6
6,894,253 + AO356_29625 0.41 +0.9
6,894,254 - AO356_29625 0.41 +1.6
6,894,312 - AO356_29625 0.47 +0.3
6,894,368 - AO356_29625 0.53 -0.2
6,894,704 + -0.6
6,894,705 - +0.6
6,894,917 + AO356_29630 0.59 +0.4
6,894,918 - AO356_29630 0.60 +0.9
6,894,941 + AO356_29630 0.72 +0.0
6,894,942 - AO356_29630 0.72 -2.2
6,894,962 + AO356_29630 0.83 -0.4
6,894,963 - AO356_29630 0.84 +0.7
6,894,963 - AO356_29630 0.84 +0.7
6,894,963 - AO356_29630 0.84 +0.7
6,894,963 - AO356_29630 0.84 -0.6
6,894,963 - AO356_29630 0.84 -0.2
6,895,062 + +1.0
6,895,063 - +0.4
6,895,063 - +0.0
6,895,092 + +0.6
6,895,412 - AO356_29635 0.34 -0.4
6,895,454 + AO356_29635 0.39 +0.8
6,895,454 + AO356_29635 0.39 -0.6
6,895,596 + AO356_29635 0.57 -0.2
6,895,596 + AO356_29635 0.57 +0.2
6,895,597 - AO356_29635 0.57 -0.4
6,895,597 - AO356_29635 0.57 -0.4
6,895,749 - AO356_29635 0.76 -0.4
6,895,749 - AO356_29635 0.76 +1.6
6,895,749 - AO356_29635 0.76 -1.8
6,895,909 - +1.0
6,895,909 - -0.4
6,895,963 - -0.2
6,896,066 - -0.5
6,896,150 - +0.9
6,896,152 + -0.3
6,896,152 + -1.0
6,896,536 + AO356_29640 0.32 -0.4
6,896,537 - AO356_29640 0.32 -0.4
6,896,701 - AO356_29640 0.45 +0.5
6,896,893 + AO356_29640 0.60 -0.6
6,896,909 + AO356_29640 0.61 +0.1

Or see this region's nucleotide sequence